Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0768
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 30 0.34
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 27 1.8
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.4
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 27 2.4
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 3.2
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 4.2
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 26 4.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 7.4
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 9.7
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 29.9 bits (64), Expect = 0.34
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +2
Query: 26 KVVTLDLQTILQNSNWYKELSSTQKIFVNQHLVPVTQMIKQFHQENVTGKKIDLSFIQSN 205
K+V L L+ L + K +S TQKI HL T + H +T +K+ + S
Sbjct: 292 KIVDLFLRFFLSWTG--KNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDDSP 349
Query: 206 SILCNIFTNL 235
+ +TNL
Sbjct: 350 GFKPSYYTNL 359
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 29 VVTLDLQTILQN-SNWYKELSSTQKIFVNQHLVPVTQMIKQFHQENVTGKKIDLSFIQSN 205
++ L+ L+N +WY++++ I V+Q L+ TQ++ ++ GK +++ +
Sbjct: 768 IMMLNCFASLENVDSWYQDINEIVNIIVSQRLISPTQLL------DILGKSVNIKLEHIS 821
Query: 206 SILCNIFTN 232
+ ++ N
Sbjct: 822 DSMQSVLDN 830
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 77 KELSSTQKIFVNQHLVPVTQMIKQFHQENVTGKKIDLSFIQSNSILCNIFTNL--GITLG 250
KE+ TQK N L + + + + + G+ + + S +L +IF NL G+T
Sbjct: 403 KEMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNVIQYQISRLVLKDIFFNLQIGVTFN 462
Query: 251 DMESI-HIYQN 280
+E + H++ N
Sbjct: 463 ILEYLRHLWSN 473
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 104 FVNQHLVPVTQMIKQFHQENVTGKKIDLSFIQSNSIL 214
F + +LV +T+ ++H++NV K +D S + ++
Sbjct: 432 FDHTNLVAMTRNEARYHEDNVLAKNVDPSTVYGKDVI 468
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 200 SNSILCNIFTNLGITLGDMESIHIYQNP 283
SNS L +IF+NL ++ D S ++ QNP
Sbjct: 673 SNSQLSSIFSNLSSSISDASS-NVLQNP 699
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/79 (21%), Positives = 30/79 (37%)
Frame = +2
Query: 2 GTRSNEDQKVVTLDLQTILQNSNWYKELSSTQKIFVNQHLVPVTQMIKQFHQENVTGKKI 181
GT + TL ++ L N+ +E S + + + +HQ +GK +
Sbjct: 144 GTSVMVNDLFCTLPVRRKLLEKNYKREFSKAISLLQAYATISTNKRFMVYHQTKNSGKLL 203
Query: 182 DLSFIQSNSILCNIFTNLG 238
LS + + NI G
Sbjct: 204 QLSTNSNKDMKLNIMNVFG 222
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 183 SIFLPVTFSWWNC 145
+I+LP T SWW C
Sbjct: 144 AIYLPTTVSWWVC 156
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 295 LKTPSNINQNTNPFGLNSN 351
L +PS++ N+N FGLN N
Sbjct: 855 LHSPSSLLSNSNNFGLNPN 873
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 80 ELSSTQKIFVNQHLVPVTQMIKQFHQENV---TGKKIDLSFIQSNSILCNIFTNLGITLG 250
E + +K F N V+ +IK++ + + T K ++ SF + N+FT + G
Sbjct: 189 EKNEVRKFFQNW----VSDLIKRYQFDGIRLDTAKHVEKSFFPTFIEAANVFTTGEVFHG 244
Query: 251 DMESIHIYQ 277
D + + YQ
Sbjct: 245 DPKVVGDYQ 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,503
Number of Sequences: 5004
Number of extensions: 40885
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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