Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0768
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical
           protein R90.1 protein.
          Length = 776

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 274 PKPKEALLKTPSNINQNTNPFGLNSNMQSGP 366
           P PK +LL TP +++ NT+P G + +    P
Sbjct: 534 PVPKASLLSTPRSMDSNTSPGGNSPSSPMNP 564


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 35  TLDLQTILQNSNWYKELSSTQKIFVNQHLV 124
           T DL T+ +N+ W   ++S + I++N  +V
Sbjct: 231 TRDLSTVFRNATWLANMASPEFIYINPLIV 260


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +2

Query: 17  EDQKVVTLDLQTILQNSNWYKELSSTQKIFVNQHLVPVTQMIKQFHQENVTGKKIDLSFI 196
           +++KV   +L+T+ +N +    L+   K   NQH++       +  Q  +   K    F 
Sbjct: 314 KNEKVEKANLETVHKNIDSLSSLAEDLK--TNQHVIETLHHFFEARQLPIIDSKYLAGFP 371

Query: 197 QSNSILCNIFTNLG 238
           +  S +  +FT+LG
Sbjct: 372 KGISDISMVFTDLG 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,786
Number of Sequences: 27780
Number of extensions: 227124
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)