Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0768
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48657.1 68418.m06020 defense protein-related weak similarity...    29   3.6  
At5g11070.1 68418.m01293 expressed protein                             29   3.6  
At4g21120.1 68417.m03054 amino acid permease family protein simi...    28   6.4  
At2g21230.2 68415.m02521 bZIP family transcription factor contai...    28   6.4  
At2g21230.1 68415.m02520 bZIP family transcription factor contai...    28   6.4  
At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putat...    27   8.4  
At4g21490.1 68417.m03107 pyridine nucleotide-disulphide oxidored...    27   8.4  
At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containi...    27   8.4  

>At5g48657.1 68418.m06020 defense protein-related weak similarity to
           SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
           thaliana}
          Length = 245

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +2

Query: 2   GTRSNEDQKVVTLDLQTILQNSNWYKELSSTQKIFVNQHLVPVTQMIKQFHQENVTGKKI 181
           GT SN + +  TL    + ++ N  +  + T       H  P   +I Q HQ   +  K+
Sbjct: 123 GTGSNMENQSYTLIFDKVKEDRNQARSYNGTD------HSTPTRPIIDQHHQPLPSSPKV 176

Query: 182 DLSFIQSNSILCNIFTNL 235
           D   I S S +  +F  L
Sbjct: 177 DNQNIISLSFINPLFLQL 194


>At5g11070.1 68418.m01293 expressed protein
          Length = 152

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 663 RCRQSKSHYRSRVR*PACSRNGLVHHNYWH*SY 565
           RCR+ KS  +   R   C+ N  VHH++   SY
Sbjct: 68  RCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSY 100


>At4g21120.1 68417.m03054 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 594

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 644 VITGAGSVNRHVPVMVWSTIITGIEVMRYIWSYSE 540
           V+TG  + N   P +V S +++G+  M  ++ Y+E
Sbjct: 94  VLTGLEARNHSGPAVVLSYVVSGVSAMLSVFCYTE 128


>At2g21230.2 68415.m02521 bZIP family transcription factor contains
           a bZIP transcription factor basic domain signature
           (PDOC00036)
          Length = 460

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 ICQSTFSTRNSDDQTVPPRKCYRQKN 180
           +C S+ S    D + +PPRK +R+ N
Sbjct: 123 MCHSSSSRNAGDGENLPPRKSHRRSN 148


>At2g21230.1 68415.m02520 bZIP family transcription factor contains
           a bZIP transcription factor basic domain signature
           (PDOC00036)
          Length = 519

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 ICQSTFSTRNSDDQTVPPRKCYRQKN 180
           +C S+ S    D + +PPRK +R+ N
Sbjct: 123 MCHSSSSRNAGDGENLPPRKSHRRSN 148


>At5g57190.1 68418.m07144 phosphatidylserine decarboxylase, putative
           similar to SP|P53037 Phosphatidylserine decarboxylase
           proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
           cerevisiae}; contains Pfam profile PF02666:
           phosphatidylserine decarboxylase
          Length = 615

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2

Query: 122 VPVTQMIKQFHQENVTGKKIDLSFIQSNSILCNIFT 229
           VPV+ +I+QF   +V+G    ++ I  NS  CN+FT
Sbjct: 480 VPVSGVIEQF--VDVSGSLYTVNPIAVNSKYCNVFT 513


>At4g21490.1 68417.m03107 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica};
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 568

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 128 VTQMIKQFHQENVTGKKIDLSFIQSNSILCNI 223
           +T ++KQ   EN + K ++L   +  S LC +
Sbjct: 416 ITDLLKQAQAENGSNKSVELDIEELKSALCQV 447


>At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 598

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 137 MIKQFHQENVTGKKIDLSFIQSNSILCNI 223
           +I+QFH+E   G K+D+S   S SI   I
Sbjct: 16  LIQQFHREYKRGNKLDVSCRTSGSISSKI 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,603
Number of Sequences: 28952
Number of extensions: 207297
Number of successful extensions: 542
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)