Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0766
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)                       31   0.95 
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)                        31   0.95 
SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5417| Best HMM Match : Phage_fiber (HMM E-Value=6.6)                28   6.7  

>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 521 LLYF--CIYFILYECVCCIKCXNWKKKR 598
           LL+F  CIY     C CC +C  W+KKR
Sbjct: 100 LLFFGCCIY-----CCCCRRCSKWRKKR 122


>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 521 LLYF--CIYFILYECVCCIKCXNWKKKR 598
           LL+F  CIY     C CC +C  W+KKR
Sbjct: 100 LLFFGCCIY-----CCCCRRCSKWRKKR 122


>SB_19229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 515 PRLLYFCIYFILYECVCCIKCXNWKKK 595
           P ++ FCIY     C CC KC   KKK
Sbjct: 71  PMIVIFCIY-----CCCCRKCGKKKKK 92


>SB_5417| Best HMM Match : Phage_fiber (HMM E-Value=6.6)
          Length = 164

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 291 H*ISLKLISFRNYII*YQCYCYEKAYTYREYRIELTLLKYSLIFS 157
           H IS +  +   Y+  Y    Y   YT+ +YR+E T  KY L ++
Sbjct: 91  HEISTREYTHMKYLPEYTHMKYLPEYTHMKYRLEYTHRKYRLEYT 135



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 255 YII*YQCYCYEKAYTYREYRIELTLLKY 172
           Y+  Y    Y   YT+R+YR+E T +KY
Sbjct: 112 YLPEYTHMKYRLEYTHRKYRLEYTHMKY 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,013,123
Number of Sequences: 59808
Number of extensions: 237782
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)