Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0766
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical p...    29   3.4  
U41034-7|AAN72427.1|  465|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical
           protein F10E7.1 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 408 YHCD*VKQYTMFLFVNFEC--CFLSLH 482
           YHCD   +YT ++  ++EC  C++ L+
Sbjct: 105 YHCDVADEYTEYMGTDYECRYCYIYLN 131


>U41034-7|AAN72427.1|  465|Caenorhabditis elegans Hypothetical
           protein M02D8.4b protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 490 YRL*THCISETVVFLYLFY 546
           Y L THC SE ++FLY  Y
Sbjct: 95  YNLKTHCDSEVIIFLYEKY 113


>U41034-6|AAU05557.1|  538|Caenorhabditis elegans Hypothetical
           protein M02D8.4c protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 490 YRL*THCISETVVFLYLFY 546
           Y L THC SE ++FLY  Y
Sbjct: 95  YNLKTHCDSEVIIFLYEKY 113


>U41034-5|AAA82381.1|  567|Caenorhabditis elegans Hypothetical
           protein M02D8.4a protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 490 YRL*THCISETVVFLYLFY 546
           Y L THC SE ++FLY  Y
Sbjct: 95  YNLKTHCDSEVIIFLYEKY 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,899
Number of Sequences: 27780
Number of extensions: 206942
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)