Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0765
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    30   1.5  
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833     29   2.7  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    28   6.2  
07_03_0666 + 20508976-20509154,20509230-20509292,20511732-205119...    28   8.2  

>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 515 GWAAVVTILETLELISQGGWRIYVVDVYG 429
           GW A VT L  L + ++GG +++++ V G
Sbjct: 552 GWVAAVTTLNFLRIFTEGGLQMHILSVGG 580


>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
          Length = 503

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 558 EWWYLPARTHKRSYHHSPC 614
           +WW LP + HK    H PC
Sbjct: 218 KWWDLPCKPHKGGNTHGPC 236


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 512 WAAVVTILETLELISQGGWRIYVVDVYGFQ 423
           W+AV   ++  EL+ + G ++ V D+YG+Q
Sbjct: 169 WSAVRGHIQVAELLLKEGAKVDVADLYGYQ 198


>07_03_0666 +
           20508976-20509154,20509230-20509292,20511732-20511987,
           20512183-20512326,20512464-20512525,20512743-20512905
          Length = 288

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 665 KWLVHIIII*CTSAMIETWTVVVGPLV 585
           +W++ I +I  ++ +   WTV++GPL+
Sbjct: 144 QWVLGIFLITLSNVLAGLWTVLLGPLI 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,300
Number of Sequences: 37544
Number of extensions: 369318
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)