Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0765
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical ...    28   5.6  

>Z83109-6|CAB05522.1|  362|Caenorhabditis elegans Hypothetical
           protein F44G3.11 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -1

Query: 521 FEGWAAVVTILETLELISQGGWRIYVVDVYGFQ*PLNTRWAVSSSTHLSNKKNRRA 354
           F+GW  +  I+      +  G  IY  D          RWA+  S  L +KKN RA
Sbjct: 136 FKGWRFIFCIMYCAAFGADWGLSIYYFDEMDAYADHYFRWALILSAALFHKKNSRA 191


>AC006720-5|AAF60449.2|  297|Caenorhabditis elegans Hypothetical
           protein Y17G9B.8 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 306 SGSRYSFCSDIDSCRKRTTIFFIA*MGGRAHSPPGVKWLLEP 431
           S SRY  C D+D  +K+ T+F       R+H  P  KW   P
Sbjct: 175 SNSRYE-CRDVDDDKKKLTVF------ARSHLLPLPKWKANP 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,198
Number of Sequences: 27780
Number of extensions: 310251
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)