Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0765
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ...    30   1.3  
At2g14250.1 68415.m01592 ankyrin repeat family protein contains ...    30   1.7  
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea...    29   3.9  

>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
           ankyrin repeat family protein similar to patsas protein
           [Drosophila melanogaster] GI:6002770; contains Pfam
           profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
           finger domain
          Length = 592

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 512 WAAVVTILETLELISQGGWRIYVVDVYGFQ 423
           W+AV   ++  EL+ Q G R+   D+YG+Q
Sbjct: 104 WSAVRGAIQVAELLLQEGARVDATDMYGYQ 133


>At2g14250.1 68415.m01592 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 241

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 512 WAAVVTILETLELISQGGWRIYVVDVYGFQ 423
           WAAV   ++  +L+ Q G RI  VDV GF+
Sbjct: 97  WAAVKGSIDVADLLLQHGARIEAVDVNGFR 126


>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400); AND-1
           protein - Homo sapiens, EMBL:AJ006266
          Length = 951

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 515 GWAAVVTILETLELISQGGWRIYVVDVYGFQ*PLNTRWAVSSSTHLS 375
           GW A VT L  L + S+GG + +++ + G   P+ T  AV    HL+
Sbjct: 545 GWVAAVTSLNLLRVFSEGGLQKHILSLDG---PVVT--AVGCKDHLA 586


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,261,957
Number of Sequences: 28952
Number of extensions: 285931
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)