Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0764
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.005
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 38 0.007
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 36 0.022
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 34 0.089
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.12
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 34 0.12
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 33 0.15
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.27
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.4
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.9
SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16) 29 4.4
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18) 28 7.7
SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19) 28 7.7
SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 97.1 bits (231), Expect = 1e-20
Identities = 51/114 (44%), Positives = 70/114 (61%)
Frame = +2
Query: 2 IIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFXSVRRRMMMQSG 181
II+YR YFG YDT + +L ++ +VIS+ + VT AG+ SYP ++RRRMMM SG
Sbjct: 186 IIVYRGFYFGLYDTLKPILLG-EDAGVVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSG 244
Query: 182 RAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLRGTGGAFVLVLYDEIKKV 343
A + YK +I C I K EG KGA +N+LRG GA VL +D+ K++
Sbjct: 245 EA---VKYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGFDKFKEL 295
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 167 MMQSGRAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLR 292
M+++GR D YK I C + ++EG F++G +N +R
Sbjct: 43 MLKAGRL--DHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIR 82
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +2
Query: 68 KNTPIVISWAIAQTVTTVAGIISYPFXSVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 247
+ P+ V+ +YP VRRRM M+ RA D YK+T+H +++I K E
Sbjct: 157 RELPVNFKLMCGSLAGAVSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLE 214
Query: 248 GTWXFFKGAFSNVLR 292
G +KG + N+L+
Sbjct: 215 GFRGLYKGMWPNILK 229
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 119 VAGIISYPFXSVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLR-G 295
+AG +S S R+ + + +K + I K EG +FKG +NV+R
Sbjct: 43 IAGAVSRTSVSPLERVKILLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIF 102
Query: 296 TGGAFVLVLYDEIKK 340
A Y+E KK
Sbjct: 103 PYSAVQFAAYEEYKK 117
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 38.3 bits (85), Expect = 0.005
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Frame = +2
Query: 11 YRASYFGFYDTARGMLPDPKNTPIVISWA-IAQTVTTVAGIIS-YPFXSVRRRMMMQSGR 184
Y A + ++ L DP N + S + +A T +T+ +++ YP ++ R+ +Q
Sbjct: 127 YSAVQYAAFNRIVASLEDPHNGELSDSGSMLAGTSSTLIAMVTVYPCEVIKTRLTVQHVN 186
Query: 185 AKSDILYKNTIHCWATIAKTEGTWXFFKG---AFSNVLRGTGGAFV 313
KS+ YK H TI + EG +KG +F + GG+F+
Sbjct: 187 -KSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFPFAGGSFL 231
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 77 PIVISWAIAQTVTTVAGIISYPFXSVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTW 256
P+V VA +YP VRRRM M+ G Y +T + I ++EG
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFI 737
Query: 257 XFFKGAFSNVLR 292
FKG + N+L+
Sbjct: 738 GLFKGMWPNLLK 749
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 137 YPFXSVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVL 289
YP V+ RM Q +++ +YKN+I C+ + + EG ++G +L
Sbjct: 932 YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 92 WAIAQTVTTVAGIIS-YPFXSVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTWXFFK 268
W++ T +T+ +++ YP ++ R+ +Q KS+ YK H TI + EG +K
Sbjct: 424 WSLVGTSSTLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYK 482
Query: 269 GAFSNVL 289
G + L
Sbjct: 483 GVTPSFL 489
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 122 AGIISYPFXSVRRRMM-MQSGRAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLRGT 298
A ++ +P +++ R+ M + +YKN+ C+ I + EG + F+G +L
Sbjct: 52 ANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSI 111
Query: 299 GGAFVL 316
VL
Sbjct: 112 PNTTVL 117
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 92 WAIAQTVTTVAGIISYPFXSVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTWXF 262
+ + T + A + P V+ RM +Q R + Y+N H TIAK EG
Sbjct: 8 FVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAM 67
Query: 263 FKGAF 277
KG F
Sbjct: 68 QKGLF 72
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 119 VAGIISYPFXSVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTWXFFKGAFSNVLR 292
V I P + +M +Q RA+S I Y+N H TIA+T G ++G + ++R
Sbjct: 214 VVAFIEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVR 273
Query: 293 G-TGGAFVLVLYDEIKKVL 346
F Y+ K +L
Sbjct: 274 NIPANGFFFGFYEFTKNLL 292
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 32.7 bits (71), Expect = 0.27
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +2
Query: 8 IYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT--VAGIISYPFXSVRRRMMMQSG 181
IY ++ G Y+ + +L +T + I V++ + I+ P V+ R Q+
Sbjct: 88 IYSSTRLGAYEPIKNLLGATDSTSAALWKKIVAGVSSGVIGSAIATPTDLVKIRF--QAV 145
Query: 182 RAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLRGTG-GAFVLVLYDEIKKVL 346
+ I YKN H + IAK EG + G V R + YD K +L
Sbjct: 146 KIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPTVKRAACISGTQIPTYDHTKHLL 201
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +2
Query: 17 ASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIIS-YPFXSVRRRMMMQSGRAKS 193
A YFG Y+ + + V ++ +A V S +PF ++ R+ K
Sbjct: 110 AVYFGVYELLCDWFSNLFGSRGVATYLMAGGFAGVVSWASTFPFDVIKSRIQADGNLGK- 168
Query: 194 DILYKNTIHCWATIAKTEGTWXFFKGAFSNVLRG 295
YK + C K EG F +G + +LRG
Sbjct: 169 -FRYKGMMDCALQSYKEEGMIVFTRGIWPTLLRG 201
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 173 QSGRAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLRGTGGAFVLV-LYDEIK 337
Q R D Y+ + T+ KTEG +KG + R A + + LYD++K
Sbjct: 56 QGVRTTHDAHYRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVK 111
>SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16)
Length = 656
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 20 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFXSVRRRMMMQSGRAK 190
SY G T++G+ PDP+ VI + V + G ++Y ++ + +Q
Sbjct: 58 SYVGHRLTSQGLQPDPEKIKAVIDMPPPTDKEGVQRLIGTVNYLDKFIKNKAEIQG--PI 115
Query: 191 SDILYKNTIHCWAT 232
S +L K+ I W T
Sbjct: 116 SQLLQKDAIFVWDT 129
>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1451
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 14 RASYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFXSVRRRMMMQSGR 184
+ SY G T++G+ PDP+ VI + V + G ++Y ++ + +Q
Sbjct: 516 KVSYVGHRLTSQGLQPDPEKIKAVIDMPPPRDKEGVQRLIGTVNYLDKFIQNKAEIQG-- 573
Query: 185 AKSDILYKNTIHCWAT 232
S +L K+ I W T
Sbjct: 574 PISQLLQKDAIFVWDT 589
>SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)
Length = 1052
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 20 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFXSVRRRMMMQSGRAK 190
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 363 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 420
Query: 191 SDILYKNTIHCWAT 232
S +L K+ I W T
Sbjct: 421 SQLLQKDAIFVWDT 434
>SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19)
Length = 1053
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 20 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFXSVRRRMMMQSGRAK 190
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 849 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 906
Query: 191 SDILYKNTIHCWAT 232
S +L K+ I W T
Sbjct: 907 SQLLQKDAIFVWDT 920
>SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 20 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFXSVRRRMMMQSGRAK 190
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 363 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 420
Query: 191 SDILYKNTIHCWAT 232
S +L K+ I W T
Sbjct: 421 SQLLQKDAIFVWDT 434
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,318
Number of Sequences: 59808
Number of extensions: 275884
Number of successful extensions: 581
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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