Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0764
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   207   8e-56
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   207   8e-56
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  207 bits (505), Expect = 8e-56
 Identities = 95/115 (82%), Positives = 104/115 (90%)
 Frame = +2

Query: 2   IIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFXSVRRRMMMQSG 181
           IIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPF +VRRRMMMQSG
Sbjct: 186 IIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSG 245

Query: 182 RAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 346
           RAKS+ILYK+T+HCWATI KTEG   FFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 246 RAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 29.9 bits (64), Expect = 0.022
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 95  AIAQTVTTVAGIISYPFXSVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTWXFFK 268
           A A + TTVA     P   V+  + +Q  S +   +  YK  I C+  I K +G   +++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 269 GAFSNVLR 292
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 137 YPFXSVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTWXFFKG 271
           YP    R R+    G+A  +  +    +C   I K +G    ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  207 bits (505), Expect = 8e-56
 Identities = 95/115 (82%), Positives = 104/115 (90%)
 Frame = +2

Query: 2   IIIYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFXSVRRRMMMQSG 181
           IIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPF +VRRRMMMQSG
Sbjct: 186 IIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSG 245

Query: 182 RAKSDILYKNTIHCWATIAKTEGTWXFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 346
           RAKS+ILYK+T+HCWATI KTEG   FFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 246 RAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 29.9 bits (64), Expect = 0.022
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 95  AIAQTVTTVAGIISYPFXSVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTWXFFK 268
           A A + TTVA     P   V+  + +Q  S +   +  YK  I C+  I K +G   +++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 269 GAFSNVLR 292
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 137 YPFXSVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTWXFFKG 271
           YP    R R+    G+A  +  +    +C   I K +G    ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 336 LISSYKTSTKAPPVPLRTLEKAPL 265
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 590 KKRLYNMKAIEMSKLEKFTSVRTSNYVNLIKQ*IMESLYN 471
           K+R  + +  E SK  K  S  ++NY++ I     ++ YN
Sbjct: 64  KERSRDKRERERSKERKIISSLSNNYISNISNYNNDNNYN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,445
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)