Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0763
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    26   0.24 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    26   0.31 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    26   0.31 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   0.96 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.1  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
 Frame = -3

Query: 396 IAQGNGLPHFLAGRNS-----EWRWQE 331
           +A G  +PHF A RNS     EW+W +
Sbjct: 13  LALGLFVPHFAADRNSIVHLFEWKWSD 39


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = -3

Query: 396 IAQGNGLPHFLAGRNS-----EWRWQE 331
           +A G   PHF A RNS     EW+W +
Sbjct: 14  LALGQKDPHFAADRNSIVHLFEWKWSD 40


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
 Frame = -3

Query: 396 IAQGNGLPHFLAGRNS-----EWRWQE 331
           +A G   PHF A RNS     EW+W +
Sbjct: 14  LALGQKDPHFAADRNSIVHLFEWKWSD 40


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 536 KSPQCGNSGDGIC 574
           K+P+ GN  DG+C
Sbjct: 431 KTPESGNESDGVC 443


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 338 QRHSLFLPARKC-GRPFPCAIPGGILFARLLSPXTESSQVSF 460
           QR++ +L A     +P P     G    RLL+P TE S   F
Sbjct: 224 QRYNPYLQAASMLPKPTPLVPQQGFNMERLLAPSTEVSAPFF 265


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 189 HIMRHQQYGKAVLLPK 236
           H  +HQ YG AV +P+
Sbjct: 23  HPHQHQHYGAAVQVPQ 38


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 189 HIMRHQQYGKAVLLPK 236
           H  +HQ YG AV +P+
Sbjct: 23  HPHQHQHYGAAVQVPQ 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,256
Number of Sequences: 336
Number of extensions: 2785
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)