Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0763
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8) 36 0.038
SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.36
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 32 0.36
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.47
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44) 31 0.62
SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7) 31 0.83
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28) 31 0.83
SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44) 30 1.4
SB_10866| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_42212| Best HMM Match : ABC_tran (HMM E-Value=0) 30 1.9
SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41) 29 2.5
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0) 29 2.5
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_37816| Best HMM Match : ABC_tran (HMM E-Value=0.03) 29 3.3
SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4) 29 4.4
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.4
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_6324| Best HMM Match : MCM (HMM E-Value=0) 28 5.8
SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11) 28 5.8
SB_43454| Best HMM Match : Peptidase_M2 (HMM E-Value=0.0041) 28 5.8
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24) 28 7.7
SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3) 28 7.7
SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0) 28 7.7
>SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8)
Length = 358
Score = 35.5 bits (78), Expect = 0.038
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = -3
Query: 519 PCRRASIMLFGGVSXKERLLKETCEDSVXGLNRRANKIPPGIAQ-GNGLPHF-LAGRNSE 346
PC + + +LF +S E +LKE E + GL ++ N + + Q +GLP + LA RN +
Sbjct: 103 PCSQGTYLLFSPISPSEEVLKEVTEWRISGLLKQRNILTLEMRQLCSGLPVYRLAERNDD 162
>SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = -2
Query: 397 DRAGEWPAALSXGQKQRVALARAL 326
++A ++P+ LS GQ+QRVA+ARAL
Sbjct: 148 EQADKYPSQLSGGQQQRVAIARAL 171
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 215 TVLLVTHDVSEAVAMADRVLLIEEGKI 135
TVLL TH + EA + DR+ +I +GK+
Sbjct: 493 TVLLSTHHMDEADVLGDRIAIISQGKL 519
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE + LS GQKQRVA+ARAL+
Sbjct: 767 GEQGSQLSGGQKQRVAIARALV 788
>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 844
Score = 31.9 bits (69), Expect = 0.47
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE A +S GQKQR+A+ARAL+
Sbjct: 250 GERGAQMSGGQKQRIAIARALV 271
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
G+ +S GQKQR+A+ARALI
Sbjct: 802 GDKGTLISGGQKQRIAIARALI 823
>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
Length = 945
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 251 DLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 135
DL++ + G T+LL TH + EA + DR+ +I GK+
Sbjct: 647 DLLIKY--KKGRTILLSTHFMEEADILGDRIAIISSGKL 683
>SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7)
Length = 626
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 88 DPNRRGRGISTVKSRPIFPSSINSTRSAIATASLTSCVTNSTVKPC 225
DP RG GI + P+ +N RS+ T S T + PC
Sbjct: 220 DPCHRGNGIQNLLQDPVTGGMVNRNRSSFRTLSPGEWYTEAPSGPC 265
>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
Length = 951
Score = 31.1 bits (67), Expect = 0.83
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 469 EVIKGNLRRFRXRA*QAGKQDPARDRAGEWPAALSXGQKQRVALARAL 326
+ I +R+ + R G + GE LS GQKQR++LARAL
Sbjct: 133 QCILSQMRKTKGRVGIGGSIAYVSQQIGERGINLSGGQKQRISLARAL 180
>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARALI
Sbjct: 487 GEKGLQLSGGQKQRIAIARALI 508
>SB_52472| Best HMM Match : ABC_tran (HMM E-Value=4.62428e-44)
Length = 322
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 415 KQDPARDRAGEWPAALSXGQKQRVALARALIHR 317
K++ D EW S G+KQR+ +AR H+
Sbjct: 183 KREGGWDTVKEWKDVFSGGEKQRMGMARLFYHK 215
>SB_10866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 415 KQDPARDRAGEWPAALSXGQKQRVALARALIHR 317
K++ D EW S G+KQR+ +AR H+
Sbjct: 43 KREGGWDTVKEWKDVFSGGEKQRMGMARLFYHK 75
>SB_42212| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 301
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALIHR 317
R GE A LS G+KQ + LARAL+ +
Sbjct: 189 RLGEGGAGLSMGEKQLLCLARALLQK 214
>SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)
Length = 474
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 385 EWPAALSXGQKQRVALARALIH 320
E AA S G+KQ VALARAL++
Sbjct: 197 ECSAAFSTGEKQLVALARALVY 218
>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1636
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 215 TVLLVTHDVSEAVAMADRVLLIEEGKI 135
T+LL TH + EA + DR+ ++ EG I
Sbjct: 570 TILLTTHFMDEADLLGDRIAIMAEGHI 596
>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1154
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 260 RDQDLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 120
R + IV Q+HG V + V++AVA+ + I GK G D++
Sbjct: 667 RHKVAIVKALQQHGHVVAMTGDGVNDAVALKRADIGIAMGKSGTDVS 713
>SB_37816| Best HMM Match : ABC_tran (HMM E-Value=0.03)
Length = 73
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 376 AALSXGQKQRVALARALIHR 317
A LS G+ +RV +ARAL+HR
Sbjct: 2 ATLSTGEARRVLIARALVHR 21
>SB_53526| Best HMM Match : Cohesin (HMM E-Value=8.4)
Length = 248
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = -1
Query: 215 TVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDI 111
TVL + H ++ V ADR++++E GK+ ++++ ++
Sbjct: 16 TVLTIAHRLN-TVLTADRIMVMEAGKVRVNISANV 49
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 221 GFTVLLVTHDVSEAVAMADRVLLIEEGKI 135
G TV+L TH + EA + DR+ ++ +G++
Sbjct: 381 GKTVILTTHFMDEADFLGDRIAIMADGQL 409
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQ+QR+A+ARA++
Sbjct: 1184 GERGQMLSGGQRQRIAIARAIL 1205
>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
Length = 1592
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 36 TLHHPLQHLRFQLR*SHRP*STRTG 110
T HH L H+++ L+ +H+P RTG
Sbjct: 15 TTHHELGHIQYFLQYAHQPYEYRTG 39
>SB_52373| Best HMM Match : ABC_tran (HMM E-Value=3.4e-11)
Length = 406
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARAL 326
GE ALS GQ+ RV+LARAL
Sbjct: 191 GERGVALSGGQRARVSLARAL 211
>SB_43454| Best HMM Match : Peptidase_M2 (HMM E-Value=0.0041)
Length = 192
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 36 TLHHPLQHLRFQLR*SHRP*STRTG 110
T HH L H+++ L+ +H+P RTG
Sbjct: 126 TTHHELGHIQYFLQYAHQPYEYRTG 150
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 119 LSNPDQFFPLQLTAPGQPSLPLRSHHASPTVR*SRAPAKVTQSNPDLES 265
+ + D+ PL+ P PS P S SPT+ + APA T++ ++ S
Sbjct: 894 MDSGDEEPPLKKKKPKTPSTPPGSPPRSPTLAYTTAPADTTENQCNILS 942
>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
Length = 569
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARAL 326
GE ALS GQK RV LARA+
Sbjct: 246 GERGVALSGGQKARVTLARAV 266
>SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3)
Length = 681
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 28 DSPRCITRCNTSASSSANRTDPNRRGR 108
D+PR T T +S+ N DP RRG+
Sbjct: 287 DTPRVTTGHITEKTSACNHRDPERRGQ 313
>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARAL 326
GE ALS GQ+ RV+LARAL
Sbjct: 899 GERGIALSGGQRARVSLARAL 919
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,380
Number of Sequences: 59808
Number of extensions: 393530
Number of successful extensions: 1025
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -