Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0763
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47220.1 68415.m05897 3' exoribonuclease family domain 1 prot... 32 0.39
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 32 0.39
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 31 0.51
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 31 0.67
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 31 0.67
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu... 31 0.67
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 31 0.89
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 31 0.89
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 31 0.89
At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu... 31 0.89
At5g46540.1 68418.m05730 ABC transporter family protein contains... 30 1.2
At5g39040.1 68418.m04724 ABC transporter (TAP2) TAP-like ABC tra... 30 1.2
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type... 30 1.2
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 30 1.2
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu... 30 1.2
At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein, pu... 30 1.2
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 30 1.2
At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein, pu... 30 1.2
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 30 1.2
At4g18050.1 68417.m02686 ABC transporter family protein contains... 30 1.6
At4g36770.1 68417.m05217 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.1
At4g33905.1 68417.m04811 peroxisomal membrane protein 22 kDa, pu... 29 2.1
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 29 2.1
At1g62110.1 68414.m07008 mitochondrial transcription termination... 29 2.1
At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein, pu... 29 2.7
At4g19210.1 68417.m02834 RNase L inhibitor protein, putative sim... 29 2.7
At5g13000.1 68418.m01490 glycosyl transferase family 48 protein ... 29 3.6
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 29 3.6
At4g28630.1 68417.m04093 ABC transporter family protein identica... 29 3.6
At4g28620.1 68417.m04092 ABC transporter family protein identica... 29 3.6
At4g25450.1 68417.m03665 ABC transporter family protein similar ... 29 3.6
At3g59140.1 68416.m06593 ABC transporter family protein putative... 29 3.6
At3g13100.1 68416.m01640 ABC transporter family protein similar ... 29 3.6
At1g65410.1 68414.m07421 ABC transporter family protein contains... 29 3.6
At5g01280.1 68418.m00037 expressed protein 28 4.8
At2g41170.1 68415.m05085 F-box family protein contains Pfam PF00... 28 4.8
At1g30410.1 68414.m03717 ATP-binding cassette transport protein,... 28 4.8
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 28 4.8
At3g09000.1 68416.m01053 proline-rich family protein 28 6.3
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr... 28 6.3
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 28 6.3
At4g29840.2 68417.m04247 threonine synthase, chloroplast identic... 27 8.3
At4g29840.1 68417.m04248 threonine synthase, chloroplast identic... 27 8.3
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 27 8.3
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ... 27 8.3
At1g16630.1 68414.m01992 expressed protein 27 8.3
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 27 8.3
>At2g47220.1 68415.m05897 3' exoribonuclease family domain 1
protein-related similar to polynucleotide phosphorylase
[Pisum sativum] GI:2286200, polyribonucleotide
phophorylase [Spinacia oleracea] GI:1924972; contains
Pfam profiles PF05266: Protein of unknown function
(DUF724), weak hit to PF01138: 3' exoribonuclease
family, domain 1
Length = 469
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = -1
Query: 230 QEHGFTVLLVTHDVSEAVAMADRVL-LIEEGKIGLDLTVDIPRPRRLGSVRLAELEAEVL 54
++HGFTV +++ +A+ DR L ++EE K+ D + E+E ++L
Sbjct: 365 EKHGFTVTAPLSRIAKLLALKDRQLKILEELKVFDKEMKDESSKKHKAEQEFGEMERKIL 424
Query: 53 Q---RVMQRGESETRLRKQ 6
+ +V++ + E L KQ
Sbjct: 425 EVKNKVLELQKQEAALEKQ 443
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALIHR 317
GE LS GQKQR+A+ARAL+ +
Sbjct: 1157 GERGVQLSGGQKQRIAIARALVRK 1180
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR+A+ARA++
Sbjct: 499 QVGERGLQLSGGQKQRIAIARAML 522
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 421 AGKQDPARDRAGEWPAALSXGQKQRVALARALI 323
+G Q GE LS GQKQRVA+ARA++
Sbjct: 1171 SGLQQGYDTMVGERGVQLSGGQKQRVAIARAIV 1203
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 536 GEHGTQLSGGQKQRIAVARAIL 557
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR+A+ARA+I
Sbjct: 478 QVGERGVQLSGGQKQRIAIARAII 501
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
G+ LS GQKQR+A+ARA++
Sbjct: 1115 GDRGVQLSGGQKQRIAIARAVL 1136
>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
[Coptis japonica] GI:14715462, MDR-like p-glycoprotein
[Arabidopsis thaliana] GI:24324262; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1286
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 421 AGKQDPARDRAGEWPAALSXGQKQRVALARALI 323
+G Q GE LS GQKQRVA+ARA++
Sbjct: 1165 SGLQQGYDTMVGERGIQLSGGQKQRVAIARAIV 1197
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 517 GEHGTQLSGGQKQRIAVARAIL 538
>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1273
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR+A+ARA++
Sbjct: 499 KVGEHGTQLSGGQKQRIAIARAIL 522
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQRVA+ARA++
Sbjct: 1163 GEKGIQLSGGQKQRVAIARAIV 1184
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -2
Query: 400 RDRAGEWPAALSXGQKQRVALARALI 323
+ + GE +S GQKQR+A+ARA+I
Sbjct: 488 KTQVGERGVQMSGGQKQRIAIARAII 513
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
G+ LS GQKQR+A+ARA++
Sbjct: 1130 GDKGVQLSGGQKQRIAIARAVL 1151
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE +S GQKQR+A+ARALI
Sbjct: 407 QVGERGVHMSGGQKQRIAIARALI 430
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC
transporter, PF00664: ABC transporter transmembrane
region
Length = 1488
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -2
Query: 406 PARDRA--GEWPAALSXGQKQRVALARAL 326
P RDR GE +S GQKQRV++ARA+
Sbjct: 727 PGRDRTEIGERGVNISGGQKQRVSMARAV 755
>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein atpgp1
GI:3849833 from [Arabidopsis thaliana]
Length = 1245
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -2
Query: 400 RDRAGEWPAALSXGQKQRVALARALI 323
+ AG+ LS GQKQRVA+ARA++
Sbjct: 1133 KTHAGDKGVQLSGGQKQRVAIARAVL 1158
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR+A+ARA++
Sbjct: 502 QVGEGGTQLSGGQKQRIAIARAVL 525
>At5g46540.1 68418.m05730 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 490 GEHGTQLSGGQKQRIAIARAIL 511
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 1139 GERGVQLSGGQKQRIAIARAIL 1160
>At5g39040.1 68418.m04724 ABC transporter (TAP2) TAP-like ABC
transporter, Rattus norvegicus, EMBL:AB027520; identical
to cDNA transporter associated with antigen
processing-like protein (TAP2); GI:19335723
Length = 644
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARAL+
Sbjct: 530 GERGLRLSGGQKQRIAIARALL 551
>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
transport protein sll1276, Synechocystis sp., PIR:S77239
Length = 634
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -1
Query: 254 QDLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 135
++ + + Q+H TV+++ H + E V MA RV L+E GK+
Sbjct: 575 REALERVMQDH--TVIVIAHRL-ETVMMAQRVFLVERGKL 611
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 376 AALSXGQKQRVALARALIHR 317
++LS GQKQR+A+ARAL +
Sbjct: 534 SSLSGGQKQRLAIARALYQK 553
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 486 GEHGTQLSGGQKQRIAIARAIL 507
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQRVA+ARA++
Sbjct: 1120 GERGIQLSGGQKQRVAIARAIV 1141
>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1229
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 481 GEHGTQLSGGQKQRIAIARAIL 502
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQRVA+ARA++
Sbjct: 1119 GERGIQLSGGQKQRVAIARAIV 1140
>At3g28860.1 68416.m03602 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]; contains Pfam profiles
PF00005: ABC transporter and PF00664: ABC transporter
transmembrane region; identical to cDNA MDR-like
p-glycoprotein (At3g28860) GI:24324261
Length = 1252
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR+A+ARA++
Sbjct: 496 QVGERGVQLSGGQKQRIAIARAML 519
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 421 AGKQDPARDRAGEWPAALSXGQKQRVALARALI 323
+G + + GE LS GQKQR+A+ARA++
Sbjct: 1132 SGLPEGYKTPVGERGVQLSGGQKQRIAIARAVL 1164
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE +S GQKQR+A+ARA+I
Sbjct: 490 QVGERGVQMSGGQKQRIAIARAII 513
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
G+ LS GQKQR+A+ARA++
Sbjct: 1130 GDRGVQLSGGQKQRIAIARAVL 1151
>At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]
Length = 1247
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR+A+ARA++
Sbjct: 503 QVGEGGTQLSGGQKQRIAIARAVL 526
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
G+ LS GQKQRVA+ARA++
Sbjct: 1139 GDKGVQLSGGQKQRVAIARAVL 1160
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 514 GEHGTQLSGGQKQRIAIARAIL 535
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQRVA+ARA++
Sbjct: 1168 GERGIQLSGGQKQRVAIARAIV 1189
>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1281
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQKQR+A+ARA++
Sbjct: 1127 GERGVQLSGGQKQRIAIARAIL 1148
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE +S GQKQR+A+ARA++
Sbjct: 488 GEHGTQMSGGQKQRLAIARAIL 509
>At4g36770.1 68417.m05217 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 457
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = -1
Query: 236 LWQEHGF---TVLLVTHDVSEAVAMADRVLLIEEGKIGLD-LTVDIPRPRRLGSV--RLA 75
L HGF TV LVT DVS + ++ + L+ E+ K + + +D+ GS+ +LA
Sbjct: 26 LLNHHGFDRVTVFLVTDDVSRSKSLIGKTLMEEDPKFVIRFIPLDVSGQDLSGSLLTKLA 85
Query: 74 ELEAEVLQRV 45
E+ + L +
Sbjct: 86 EMMRKALPEI 95
>At4g33905.1 68417.m04811 peroxisomal membrane protein 22 kDa,
putative similar to 22 kDa peroxisomal membrane protein
PMP22 [Mus musculus] gi|10954089|gb|AAG25724
Length = 261
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 52 CNTSASSSANRTDPNRRGRGISTVKSRPIFPSSINSTRSAIATASLTS 195
C++S+SSS+ + G + VKSRP+ S+ S+ IA A L+S
Sbjct: 67 CSSSSSSSSTVSTAGFIGWYLGMVKSRPVLTKSVTSSLIYIA-ADLSS 113
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 400 RDRAGEWPAALSXGQKQRVALARALI 323
+ + GE +S GQKQR+++ARA+I
Sbjct: 467 KTQVGERGVQMSGGQKQRISIARAII 492
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
G+ LS GQKQR+A+ARA++
Sbjct: 1111 GDRGVQLSGGQKQRIAIARAVL 1132
>At1g62110.1 68414.m07008 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 462
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = -1
Query: 251 DLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDIPRPRRLGSVRLAE 72
DL++SL++ +GFT +S + R+LLI+ K LD+ + R S L +
Sbjct: 85 DLVLSLFRSYGFT----NSQISSIITDYPRLLLIDAEK-SLDIKLQFLESRGASSPELTQ 139
Query: 71 LEAEVLQRV-MQRGES 27
+ + V + + M+ G+S
Sbjct: 140 IVSTVPKILGMKEGKS 155
>At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1233
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR+A++RA++
Sbjct: 492 QVGERGIQLSGGQKQRIAISRAIV 515
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE +S GQ+QR+A+ARA++
Sbjct: 1121 KVGERGVQMSGGQRQRIAIARAIL 1144
>At4g19210.1 68417.m02834 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 605
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 215 TVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDIPR 105
T +V HD A +ADRV ++ EG+ +D T + P+
Sbjct: 520 TAFVVEHDFIMATYLADRV-IVYEGQPSIDCTANCPQ 555
>At5g13000.1 68418.m01490 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1889
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 25 SDSPRCITRCNTSASSSANRTDPNRRGRGISTVKS 129
S +PR C A A+R DP GRG+ K+
Sbjct: 57 SSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKT 91
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 272 LNATRDQDLIVSLWQEHGFTVLLVTHDVSEAVAM 171
L+ TR L+ S W +HG ++ T +S+A+A+
Sbjct: 448 LDITRPDVLLASSWLDHGLGIVKETGSMSDALAV 481
>At4g28630.1 68417.m04093 ABC transporter family protein identical
to half-molecule ABC transporter ATM1 GI:9964117 from
[Arabidopsis thaliana]
Length = 678
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS G+KQRVALARA +
Sbjct: 568 GERGLMLSGGEKQRVALARAFL 589
>At4g28620.1 68417.m04092 ABC transporter family protein identical
to half-molecule ABC transporter ATM2 GI:9964119 from
[Arabidopsis thaliana]
Length = 680
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS G+KQRVALARA +
Sbjct: 570 GERGLMLSGGEKQRVALARAFL 591
>At4g25450.1 68417.m03665 ABC transporter family protein similar to
multidrug resistance protein 2 SP:P21440 from [Mus
musculus]
Length = 714
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARALI 323
GE LS GQ+QRVA+AR+L+
Sbjct: 605 GERGGLLSGGQRQRVAIARSLL 626
>At3g59140.1 68416.m06593 ABC transporter family protein putative
multi resistance protein mrp - Arabidopsis thaliana,
EMBL:ATMRPPROT
Length = 1453
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -2
Query: 409 DPARDRAGEWPAALSXGQKQRVALARAL 326
D + GE LS GQKQR+ LARAL
Sbjct: 714 DGDQTEIGERGVNLSGGQKQRIQLARAL 741
>At3g13100.1 68416.m01640 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1493
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 406 PARDRA--GEWPAALSXGQKQRVALARAL 326
P RD+ GE LS GQKQR+ +ARAL
Sbjct: 735 PFRDQTVIGERGINLSGGQKQRIQIARAL 763
>At1g65410.1 68414.m07421 ABC transporter family protein contains
similarity to toluene tolerance protein Ttg2A GI:4336798
from [Pseudomonas putida]
Length = 345
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 379 PAALSXGQKQRVALARALI 323
P+ LS G K+RVALAR+LI
Sbjct: 217 PSELSGGMKKRVALARSLI 235
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 58 TSASSSANRTDPNRRGRGISTVKSRPIFPSS--INSTRSAIATASLTSCVTNSTVKPCS 228
+S+SSS + + P R T RP P+S ++T A T+S T+ T S +P S
Sbjct: 86 SSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSS 144
>At2g41170.1 68415.m05085 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 43 ITRCNTSASSSANRTDPNRRGRGISTVK 126
I RC TS+SSS+ ++ PN R ++ +K
Sbjct: 126 IMRCLTSSSSSSRKSKPNWSSRFVANLK 153
>At1g30410.1 68414.m03717 ATP-binding cassette transport protein,
putative similar to MgATP-energized glutathione
S-conjugate pump [Arabidopsis thaliana] GI:2909781;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1495
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 406 PARD--RAGEWPAALSXGQKQRVALARAL 326
P RD GE +S GQKQRV++ARA+
Sbjct: 727 PGRDLTEIGERGVNISGGQKQRVSMARAV 755
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = -2
Query: 388 GEWPAALSXGQKQRVALARAL 326
GE LS GQKQRV LARAL
Sbjct: 741 GERGINLSGGQKQRVQLARAL 761
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 61 SASSSANRTDPNRRGRGISTVKSRPIFPSSINSTRSA-IATASLTSC-VTNSTVKP 222
S+ S++ P RR +T SRP+ + NS S + A+LT+ T ST P
Sbjct: 152 SSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAP 207
>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
profile: PF00005 ABC transporters; similar to TAP1
protein (transporter of processed antigen) GB:AAD53033
(Oncorhynchus mykiss); identical to cDNA transporter
associated with antigen processing-like protein (TAP1)
GI:19335721
Length = 700
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -2
Query: 370 LSXGQKQRVALARALI 323
LS GQKQR+A+ARA++
Sbjct: 593 LSGGQKQRIAIARAIL 608
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE LS GQKQR++++RA++
Sbjct: 492 QVGERGIQLSGGQKQRISISRAIV 515
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 394 RAGEWPAALSXGQKQRVALARALI 323
+ GE +S GQ+QR+A+ARA++
Sbjct: 1113 KVGERGIQMSGGQRQRIAIARAVL 1136
>At4g29840.2 68417.m04247 threonine synthase, chloroplast identical
to SP|Q9S7B5 Threonine synthase, chloroplast precursor
(EC 4.2.3.1) (TS) {Arabidopsis thaliana}
Length = 535
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 55 NTSASSSANRTDPNRRGRGISTVKSRPIFPSSI---NSTRSAIATA 183
N S SS + DP RR R S ++ RP+ S N+ ++ I TA
Sbjct: 8 NASVSSLNPKQDPIRRHRSTSLLRHRPVVISCTADGNNIKAPIETA 53
>At4g29840.1 68417.m04248 threonine synthase, chloroplast identical
to SP|Q9S7B5 Threonine synthase, chloroplast precursor
(EC 4.2.3.1) (TS) {Arabidopsis thaliana}
Length = 526
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 55 NTSASSSANRTDPNRRGRGISTVKSRPIFPSSI---NSTRSAIATA 183
N S SS + DP RR R S ++ RP+ S N+ ++ I TA
Sbjct: 8 NASVSSLNPKQDPIRRHRSTSLLRHRPVVISCTADGNNIKAPIETA 53
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 27.5 bits (58), Expect = 8.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 548 CGNSGDGICCNNC 586
CG+ G+ ICC+NC
Sbjct: 732 CGDGGELICCDNC 744
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase;
contains non-consensus splice aite AC at exon 33
Length = 1959
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 25 SDSPRCITRCNTSASSSANRTDPNRRGRGISTVKS 129
+ +PR C A A+R DP GRG+ K+
Sbjct: 54 ASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKT 88
>At1g16630.1 68414.m01992 expressed protein
Length = 845
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 233 WQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDI 111
+Q H TVLL +S+AV + V +I +G I L VDI
Sbjct: 436 FQFHNLTVLLEDKRLSDAVFQSTSVEIIVDGFIVDSLEVDI 476
>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) /
1,3-beta-glucan synthase 1 nearly identical to callose
synthase 1 catalytic subunit [Arabidopsis thaliana]
GI:13649388
Length = 1922
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 25 SDSPRCITRCNTSASSSANRTDPNRRGRGISTVKS 129
+ +PR C A A+R DP GRG+ K+
Sbjct: 26 ASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKT 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,444
Number of Sequences: 28952
Number of extensions: 261825
Number of successful extensions: 739
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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