Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0762
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.1  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   3.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.9  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 232  SFLEARIHEYIFHTFTDYIIHATRFFDVKWL 324
            +FL A   E+I +T+T+  IH+ RF    WL
Sbjct: 2687 AFLVAN-SEFISYTYTERFIHSLRFLKDSWL 2716


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 571 NYAKLTLQLTIFLVSFNNTSVSR 503
           N AKL   LT +L  F NT VSR
Sbjct: 298 NEAKLFKNLTFYLYEFPNTKVSR 320


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 640 NSSRIRQNAEKHNHVPINNTL-TINYA 563
           N   IR+ A K  +VP+NN   T+ YA
Sbjct: 578 NGEEIRRLASKQLNVPVNNNFRTVGYA 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,486
Number of Sequences: 5004
Number of extensions: 56864
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)