Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0762
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099...    31   1.2  
11_06_0046 - 19585032-19585109,19585198-19585278,19585460-195855...    28   6.2  
07_03_1721 - 29023979-29025295                                         28   8.1  

>10_08_0262 +
           16307003-16308416,16309501-16309595,16309954-16309959,
           16310567-16310671
          Length = 539

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 220 FIVSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSRPGPCTRDV 80
           ++V+ ++   G++T+ RLHL   K + E  R      S  GP  RD+
Sbjct: 151 YVVTALRTIPGSKTIHRLHLYRSKPNGEQGRWTSQMVSVEGPLMRDL 197


>11_06_0046 -
           19585032-19585109,19585198-19585278,19585460-19585501,
           19586058-19586149,19586243-19586312,19587140-19587223,
           19587696-19587770,19587878-19587949,19588082-19588331,
           19590224-19590291,19590380-19590460,19590642-19590683,
           19591240-19591331,19591425-19591494,19592322-19592405,
           19592878-19592952,19593060-19593131,19593264-19593305
          Length = 489

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -1

Query: 187 ARTLRRLHLSTPKRHREH*RLNRSPSSRPGP 95
           AR L +LHLST  RHR   R   SP   P P
Sbjct: 234 ARYLPQLHLSTSSRHRR--RRRGSPPLLPSP 262


>07_03_1721 - 29023979-29025295
          Length = 438

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 327 SQPLHIKKSCSMYNVIGKSMKNILV 253
           +QP H  KSC  Y   G SM+N+ V
Sbjct: 91  NQPRHFCKSCQRYWTAGGSMRNLPV 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,035,398
Number of Sequences: 37544
Number of extensions: 318244
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)