Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0762
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26230| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_26230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 661 SSHKWKDNSSRIRQNAEKHNHVPINNTLTINYAK 560
           +S+ W   S R+ Q  + HN +P  +T+T +Y +
Sbjct: 242 TSYPWNRQSRRVTQGIDSHNELPKESTVTTSYPR 275



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 661 SSHKWKDNSSRIRQNAEKHNHVPINNTLTINYAK 560
           +S+ W   S R+ +  + HN +P  +T+T +Y +
Sbjct: 13  TSYPWNRKSQRVTRGIDCHNELPEKSTVTTSYPR 46


>SB_7783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 661 SSHKWKDNSSRIRQNAEKHNHVPINNTLTINY 566
           +S+ W   S R+    + HN +P+ +T+T +Y
Sbjct: 287 TSYPWNRQSQRVTLVIDSHNELPVESTVTTSY 318


>SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 92  H*GCHFTHGCVRISIPNC*MTGTVVSAA 9
           H  CH THG  R++  NC +T  ++ AA
Sbjct: 93  HGSCHVTHGNCRVTHGNCHVTVMLLMAA 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,796,588
Number of Sequences: 59808
Number of extensions: 409532
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)