Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0762
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf...    29   3.9  
At3g26990.1 68416.m03377 expressed protein contains Pfam domain,...    28   6.8  

>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 417

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 217 IVSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSRPGPCTRDVTSHTGASEL 53
           IVS  K AL ++ L   H +T   HR    L+ SPSS P     +      +S+L
Sbjct: 201 IVSSYKKALSSKLLSN-HSNTRNPHRPTKSLSCSPSSNPSILISEEPKSVSSSQL 254


>At3g26990.1 68416.m03377 expressed protein contains Pfam domain,
           PF04818: Protein of unknown function, DUF618
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -1

Query: 232 SSKLFIVSHIKNALGARTLRRLHLSTPKRHREH*RLNRSPSSRPGPCTRDVTSHTGASE 56
           +S+  ++SH++ AL  + L+       ++ R H ++ R  S R G   R +  H G+S+
Sbjct: 235 TSRTSLISHLREALQEQELKL------EQVRNHLQIARFQSDRTGDLCRQLLDHGGSSQ 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,711
Number of Sequences: 28952
Number of extensions: 277372
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)