Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0761
         (664 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6FJ28 Cluster: Calpain-like protease palB/RIM13; n=1; ...    34   2.7  
UniRef50_A5IZW2 Cluster: Ligase; n=1; Spodoptera litura granulov...    34   3.5  
UniRef50_A6ETV6 Cluster: Thermophilic serine proteinase; n=1; un...    33   8.1  
UniRef50_Q4PA36 Cluster: Vacuolar fusion protein MON1; n=1; Usti...    33   8.1  

>UniRef50_Q6FJ28 Cluster: Calpain-like protease palB/RIM13; n=1;
           Candida glabrata|Rep: Calpain-like protease palB/RIM13 -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 713

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = +3

Query: 15  NDNDAENAVS--NIRRKTLKLQWYSCYRSSIRSMAPIIIDTPNFILNCRVKANKSVFINS 188
           NDN AE       IR K  +  WY CY S+ + +      T + ++  R K     F  +
Sbjct: 401 NDNSAETGFQLIKIRLKPKQCIWYFCYSSTDKMLTFHTYSTSSDVVFVRSKMPGCDFDVT 460

Query: 189 LC--VPTRMAPAVYVHNNKTRVY 251
            C  +P  + P  Y ++++T +Y
Sbjct: 461 ECAILPENIVPMQYPNHSETDIY 483


>UniRef50_A5IZW2 Cluster: Ligase; n=1; Spodoptera litura
           granulovirus|Rep: Ligase - Spodoptera litura
           granulovirus
          Length = 579

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +2

Query: 260 LSVSIMCESDSSIIKNTNFMXTVEYDTVVDIDLNEPWYLQKEMWYXISFTWPHNVLPTYT 439
           LS  ++C+S+  I+   N+M +++ + VV  D    +  +++ W+ +  ++  NV     
Sbjct: 368 LSEYVLCKSNEEIVTGVNYMLSLDIEGVVIKDAEGAYEPKRKKWFKVKKSYYQNVCSADL 427

Query: 440 YVV 448
            VV
Sbjct: 428 VVV 430


>UniRef50_A6ETV6 Cluster: Thermophilic serine proteinase; n=1;
           unidentified eubacterium SCB49|Rep: Thermophilic serine
           proteinase - unidentified eubacterium SCB49
          Length = 540

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +3

Query: 15  NDNDAENAVSNIRRKTLKLQWYSCYRSSIRSMAPIIIDTPNFILNCRVKANKSVFINSLC 194
           ++   +  +SN + KT K  W +     ++    ++ D+PNF+ +  +K N+ +F +   
Sbjct: 51  SEKSLQKTLSNYKIKTFKKTWKNARPEFLKRTFFVVADSPNFLKDI-LKKNRKIFESGEM 109

Query: 195 VP 200
           +P
Sbjct: 110 IP 111


>UniRef50_Q4PA36 Cluster: Vacuolar fusion protein MON1; n=1;
           Ustilago maydis|Rep: Vacuolar fusion protein MON1 -
           Ustilago maydis (Smut fungus)
          Length = 887

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 3   ARETNDNDAEN-----AVSNIRRKTLKLQWYSCYRSSIRSMAPIIIDTPN 137
           A ET D+DAE      A   +  K     W SC++  ++++ PI I  PN
Sbjct: 443 ANETEDDDAEQGQHQVATGGVEAKRAVTDWASCHQWWLQALQPIRITVPN 492


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,791,420
Number of Sequences: 1657284
Number of extensions: 11644378
Number of successful extensions: 25119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25112
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)