Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0761
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = +3

Query: 15   NDNDAENAVSNIRRKTLKLQWYSCYRSSIRSMAPIIIDTPNFILNCRVKAN-KSVFINSL 191
            ND+DA   VS+ RR+  K          I S  PII D  + I + + + + KS+ +N+L
Sbjct: 963  NDSDASAYVSSARRRDFK-------EEKIESAPPIINDIDSEIASLKKRIHEKSLVVNAL 1015

Query: 192  CVPTRMAPAVYVHNNKTRVYSNSYLSRSCVNQIVVS*KTP 311
                  A       N + +Y    +    +N++  S K+P
Sbjct: 1016 EDKKLAATPANDVQNDSLIYRIKSVQDE-INRLSTSNKSP 1054


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 416  HNVLPTYTYVVEFRDKFLRYCGHKILSEFD 505
            H++    TY+V F    ++Y  H IL EFD
Sbjct: 1681 HSLKLLSTYMVGFSTSIIQYIIHLILLEFD 1710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,682
Number of Sequences: 5004
Number of extensions: 53213
Number of successful extensions: 137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)