Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0761
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    30   1.9  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    28   7.6  

>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
            246893-247240,247882-248721,248786-248832,249470-249596,
            249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 341  VVDIDLNEPWYLQKEMWYXISFTWPHNVLPTYTYVVEFRDKFLRYCGHKILS 496
            ++D      W  Q E W   S   P NV PT     E++ +F ++     L+
Sbjct: 1444 IIDYLRQYTWDKQLETWVKSSLVVPKNVSPTVVSPKEYKKRFRKFMAKHFLT 1495


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +2

Query: 341  VVDIDLNEPWYLQKEMWYXISFTWPHNVLPTYTYVVEFRDKFLRYCGHKILS 496
            ++D      W  Q E W   S   P N  PT     E++ +F ++     L+
Sbjct: 1316 IIDYLRQYTWDKQLETWVKTSLVVPKNASPTVISPKEYKKRFRKFMAKYFLT 1367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,879
Number of Sequences: 37544
Number of extensions: 297424
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)