Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0761
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_27483| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)                  28   5.9  
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +2

Query: 203 SNGTSSLCSQQQNKGVF*QLSVSIMCESDSSIIKNTNFMXTVEYDTVVDID 355
           SN +S++C    ++  +  L    +C + SS+IK ++ + TV YD V  I+
Sbjct: 167 SNASSTVCDCPSSENQY--LQTGGVCLATSSVIKASSELYTVNYDDVKKIN 215


>SB_27483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +2

Query: 212 TSSLCSQQQNKGVF*QLSVSIMCESDSSIIKNTNFMXTVEYDTVVDIDLNEPWYLQKEMW 391
           TS   + +QN+G     S +   ES S++  +TN     +YD+V+D D  E +Y      
Sbjct: 18  TSKRHTSRQNEGQNRVDSWNFSFESSSTVENSTNLSSGTDYDSVLD-DEEEKFYSMPS-- 74

Query: 392 YXISFTWPHNVLP 430
                 W  ++LP
Sbjct: 75  --AGCQWAQDILP 85


>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
          Length = 604

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 252 NTPLFCCCEHKLLVPFELGHR 190
           N  LFCC +++  + FEL HR
Sbjct: 431 NLQLFCCPQYERFIKFELTHR 451


>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +2

Query: 368 WYLQKEMWYXIS---FTWPHNVLPTYTYVV 448
           WY Q  MWY +    FT P+ V+P   + V
Sbjct: 371 WYPQSPMWYSVPNVVFTVPNVVVPNVVFTV 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,419,606
Number of Sequences: 59808
Number of extensions: 389064
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)