Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0761
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-11|AAB69874.1|  192|Caenorhabditis elegans Hypothetical...    30   1.7  
AF045642-1|AAZ82857.1|  230|Caenorhabditis elegans Hypothetical ...    29   3.9  

>AF022967-11|AAB69874.1|  192|Caenorhabditis elegans Hypothetical
           protein C13A2.2 protein.
          Length = 192

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 45  NIRRKTLKLQWYSCYRSSIRSMAPIIIDTPNFILNC 152
           NI RK++  ++Y C R  I + A   I  P  ++NC
Sbjct: 100 NIDRKSVNCRYYDCNRQEISNSAFNTIVAPMAVINC 135


>AF045642-1|AAZ82857.1|  230|Caenorhabditis elegans Hypothetical
           protein C17H12.13 protein.
          Length = 230

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 29  RKCSFKHKKKNIEIAVVFLLSEFNKIYGSYYYRHTKLH 142
           R C+++ +++ +  AV FL   FNK+   YY    +L+
Sbjct: 97  RLCAYEFREQRVRDAVEFLKYVFNKLDVMYYLNEHRLY 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,780
Number of Sequences: 27780
Number of extensions: 294907
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)