Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0760
(698 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-... 139 7e-32
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther... 90 4e-17
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct... 73 9e-12
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 66 1e-09
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re... 62 1e-08
UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; ... 62 1e-08
UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-direct... 59 1e-07
UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:... 57 4e-07
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 55 1e-06
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 54 4e-06
UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-direct... 48 2e-04
UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotei... 38 0.31
UniRef50_UPI0000587F4D Cluster: PREDICTED: similar to endonuclea... 37 0.41
UniRef50_UPI0000E4756E Cluster: PREDICTED: similar to endonuclea... 36 0.96
UniRef50_UPI0000499010 Cluster: hypothetical protein 147.t00018;... 36 1.3
UniRef50_UPI0000E48F4D Cluster: PREDICTED: similar to camp and c... 35 2.2
UniRef50_UPI000058732A Cluster: PREDICTED: similar to endonuclea... 35 2.2
UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome s... 27 3.5
UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2... 34 3.9
UniRef50_UPI0000E49EC7 Cluster: PREDICTED: similar to endonuclea... 33 8.9
UniRef50_Q4SE31 Cluster: Chromosome 3 SCAF14626, whole genome sh... 27 9.6
>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
protein; n=9; cellular organisms|Rep: Endonuclease and
reverse transcriptase-like protein - Bombyx mori (Silk
moth)
Length = 960
Score = 139 bits (336), Expect = 7e-32
Identities = 64/78 (82%), Positives = 68/78 (87%)
Frame = -2
Query: 235 PMICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
PMIC+RSKMSLRNKVTLYKTCIRPVMTYASVV HAAR H + Q +QSRFCR+AVGAPW
Sbjct: 797 PMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPW 856
Query: 55 FVRNVDLHDDLDLVSISK 2
FVRNVDLHDDL L SI K
Sbjct: 857 FVRNVDLHDDLGLESIRK 874
>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
mylitta|Rep: Reverse transcriptase-like - Antheraea
mylitta (Tasar silkworm)
Length = 186
Score = 90.2 bits (214), Expect = 4e-17
Identities = 38/76 (50%), Positives = 54/76 (71%)
Frame = -2
Query: 235 PMICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
P++C +SKMSLR+K+ LYKTCIRPV+TY+ V H ++ + QV Q+R R G PW
Sbjct: 8 PLLCHKSKMSLRHKLILYKTCIRPVITYSCPVFAHMSKDNFHKLQVFQNRVLRKVTGTPW 67
Query: 55 FVRNVDLHDDLDLVSI 8
++R VDLH +L++ SI
Sbjct: 68 YIRRVDLHRNLEIPSI 83
>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 1336
Score = 72.5 bits (170), Expect = 9e-12
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHA-ARIHXKSFQVIQSRFCRIAVGAPW 56
++CRRS +S+ NK+ LYK+ IRP MTYASV A + Q Q++F R A APW
Sbjct: 1251 LVCRRSALSIDNKLLLYKSVIRPTMTYASVAWAFAPCKTRMHKLQTFQNKFLRQAFNAPW 1310
Query: 55 FVRNVDLHDDLDLVSISK 2
FVRN LH ++ + ++ +
Sbjct: 1311 FVRNNQLHREVKMPTMEE 1328
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/75 (40%), Positives = 42/75 (56%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWF 53
++ RSK+SL NK+T+YK + P Y + A H K Q IQ++ R+ G WF
Sbjct: 779 LLSSRSKLSLSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWF 838
Query: 52 VRNVDLHDDLDLVSI 8
VRN LH DL L ++
Sbjct: 839 VRNTTLHRDLKLATV 853
>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
GH03753p - Drosophila melanogaster (Fruit fly)
Length = 888
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWF 53
+I RS +SL K LY + ++P+ TY S + +A+R + Q QSR RI GAPW+
Sbjct: 770 LINARSPLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWY 829
Query: 52 VRNVDLHDDLDL 17
+RN ++H DL +
Sbjct: 830 LRNENIHRDLKI 841
>UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; n=80;
Culicimorpha|Rep: Reverse transcriptase homolog protein -
Chironomus thummi
Length = 883
Score = 62.5 bits (145), Expect = 1e-08
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = -2
Query: 244 QXIPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVG 65
Q P+I R ++ +RNK+ +YK IRP+ TY A+ H + QV+Q++F RI +
Sbjct: 783 QLYPLISRNLQLDVRNKLLIYKLAIRPIFTYGCSAFGSMAKTHLQKLQVLQNKFLRIVLN 842
Query: 64 APWFVRNVDLHDDLDLVSI 8
+ R DLH + + SI
Sbjct: 843 KTRYERITDLHTEAKIPSI 861
>UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 494
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWF 53
++CR++ ++L NK LY + +RP+++YAS AA + +Q++ R APWF
Sbjct: 374 LLCRKTHLNLANKRLLYLSTLRPILSYASPCWGSAASSNLSHILTVQNKIIRQISNAPWF 433
Query: 52 VRNVDLHDDLDLVSI 8
+RN +L DL + ++
Sbjct: 434 IRNKNLEKDLKIPNL 448
>UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep: ORF1
- Drosophila melanogaster (Fruit fly)
Length = 884
Score = 57.2 bits (132), Expect = 4e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = -2
Query: 235 PMICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
P+I R+SK+S+ NK+ ++KT P++ Y S V A+ H K Q+ Q++ ++ + P+
Sbjct: 803 PLINRKSKLSISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPY 862
Query: 55 FVRNVDLH 32
+ LH
Sbjct: 863 YTNTKYLH 870
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 55.2 bits (127), Expect = 1e-06
Identities = 25/70 (35%), Positives = 41/70 (58%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWF 53
+I R+K+SL KV +YK+ + P + Y V AA+ H +++Q++ R GAPW+
Sbjct: 784 LIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWY 843
Query: 52 VRNVDLHDDL 23
+R D+ DL
Sbjct: 844 MRTRDIERDL 853
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 53.6 bits (123), Expect = 4e-06
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWF 53
++ R+S M+LR K +Y C+ P+ Y + AA+ + QV+Q+R R P++
Sbjct: 785 LLNRKSTMTLRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYY 844
Query: 52 VRNVDLHDDLDLVSISK 2
VR LH DL+L ++ +
Sbjct: 845 VRGTTLHRDLNLHTVEE 861
>UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 421
Score = 48.4 bits (110), Expect = 2e-04
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAA-RIHXKSFQVIQSRFCRIA 71
++CRRS +S+ NK+ LYK+ IRP MTYA V A + Q Q++F R A
Sbjct: 342 LVCRRSALSIDNKLLLYKSVIRPTMTYAPVAWAFAPYKTRMHKLQTFQNKFLRQA 396
>UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotein;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
polyprotein - Nasonia vitripennis
Length = 1249
Score = 37.5 bits (83), Expect = 0.31
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = -2
Query: 250 YXQXIPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIA 71
+ Q P +S +S + K+ + IR + TYA V A H K + R R
Sbjct: 1101 FIQLRPFFNNKS-VSYKTKLRAFSAIIRSIQTYAIPVWGAAGESHLKPIEGSFFRMLRSI 1159
Query: 70 VGAPWFVRNVDLHDDLDLVS 11
+ PW++RN + ++ + S
Sbjct: 1160 LDIPWYIRNKQILKEVAITS 1179
>UniRef50_UPI0000587F4D Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 405
Score = 37.1 bits (82), Expect = 0.41
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -2
Query: 250 YXQXIPMICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCR 77
+ Q I + + ++ + KV Y T ++P+M YAS++ + + K +++Q R+ R
Sbjct: 235 WNQHINTVTTKGQLHPKVKVLCYNTLLQPIMEYASIIWDPHTQANIKKLEMVQRRYVR 292
>UniRef50_UPI0000E4756E Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 293
Score = 35.9 bits (79), Expect = 0.96
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -2
Query: 205 LRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAV 68
LR KV YKT + PV+ YA+VV + + + IQ R+ R A+
Sbjct: 215 LRTKVLCYKTLVLPVLEYAAVVWDPFTQKNITRLEKIQRRYARFAL 260
>UniRef50_UPI0000499010 Cluster: hypothetical protein 147.t00018;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 147.t00018 - Entamoeba histolytica HM-1:IMSS
Length = 300
Score = 35.5 bits (78), Expect = 1.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 697 LNKKTFHDITMYLTHTHTQTCIYTVLVYRFHQSVVKL 587
L K F+ I Y TH C+Y L Y H V+++
Sbjct: 34 LRSKDFNKINYYATHQELYNCVYIALPYELHNPVIRM 70
>UniRef50_UPI0000E48F4D Cluster: PREDICTED: similar to camp and
camp-inhibited cgmp 3,5-cyclic phosphodiesterase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase
- Strongylocentrotus purpuratus
Length = 1197
Score = 34.7 bits (76), Expect = 2.2
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 232 MICRRSKMS--LRNKVTLYKTCIRPVMTYASVVVXHAARIH-XKSFQVIQSRFCRI 74
MICR K S + + V +Y T IRP++ YAS + + + + IQ R CRI
Sbjct: 997 MICRLRKASVPMHDLVNIYSTYIRPLLEYASPLWSTSITTNQINDIERIQKRICRI 1052
>UniRef50_UPI000058732A Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase, partial; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 242
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 196 KVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCR 77
KV Y T ++P+M YAS+ + + K +V+Q R+ R
Sbjct: 128 KVLCYNTLLQPIMEYASITWDPRTQANIKKLEVVQRRYVR 167
>UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 15
SCAF14556, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 291
Score = 27.5 bits (58), Expect(2) = 3.5
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 638 CLCVCVCQIHGN 673
C+CVCVCQ+ G+
Sbjct: 65 CVCVCVCQMRGS 76
Score = 25.4 bits (53), Expect(2) = 3.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 623 HSINACLCVCVC 658
H + C+CVCVC
Sbjct: 56 HEVCVCVCVCVC 67
>UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2;
Schistosoma|Rep: Endonuclease-reverse transcriptase -
Schistosoma mansoni (Blood fluke)
Length = 831
Score = 33.9 bits (74), Expect = 3.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 196 KVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGA 62
K+TLYK C+RP + Y S + + + +Q RF R +G+
Sbjct: 765 KLTLYKICVRPSLEYCSFIFSNMNTTDKIRVEDVQRRFTRQLLGS 809
>UniRef50_UPI0000E49EC7 Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 499
Score = 32.7 bits (71), Expect = 8.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 217 SKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVG 65
S S KV YK +RPV+ Y V + + + +++Q R+ R +G
Sbjct: 390 SSCSRNIKVLCYKALLRPVLEYGCKVWDPFTKDNIRQLEMVQRRYTRFTIG 440
>UniRef50_Q4SE31 Cluster: Chromosome 3 SCAF14626, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 3 SCAF14626, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 523
Score = 27.5 bits (58), Expect(2) = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 602 LMKSIN*HSINACLCVCVC 658
++ S HS+ C+CVCVC
Sbjct: 391 VLDSFRYHSLCVCVCVCVC 409
Score = 23.8 bits (49), Expect(2) = 9.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 638 CLCVCVCQIHGNV 676
C+CVCVC NV
Sbjct: 407 CVCVCVCVCVANV 419
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,943,998
Number of Sequences: 1657284
Number of extensions: 9640022
Number of successful extensions: 21467
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20106
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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