Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0760
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 31 0.68
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_4872| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 2.7
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 29 2.7
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 29 3.6
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08) 29 3.6
SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31) 29 4.8
SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 29 4.8
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 29 4.8
SB_32142| Best HMM Match : RVT_1 (HMM E-Value=2.29953e-42) 29 4.8
SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 4.8
SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43) 29 4.8
SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 4.8
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 29 4.8
SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43) 29 4.8
SB_53437| Best HMM Match : DUF1126 (HMM E-Value=5.1) 29 4.8
SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 4.8
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 4.8
SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 4.8
SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 4.8
SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 4.8
SB_27484| Best HMM Match : RVT_1 (HMM E-Value=0.035) 29 4.8
SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 29 4.8
SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3) 29 4.8
SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43) 28 6.3
SB_777| Best HMM Match : DUF1126 (HMM E-Value=5.1) 28 6.3
SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 6.8
SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_35765| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06) 28 8.4
SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_9529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 28 8.4
>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXK-SFQVIQSRFCRIA 71
++ +R+++ + + + Y TC+RP++ Y + + H + K + IQ R IA
Sbjct: 625 VLLKRARVPVSDIIGFYNTCVRPILEYCAPLFHHTIPAYVKEDLEHIQKRALSIA 679
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 217 SKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCR 77
S + L+N KTCI P M+ + + V H R+H + + CR
Sbjct: 507 SPVILKNPTVFKKTCILP-MSLSKIEVNHLVRLHVVEYHINVPHTCR 552
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -2
Query: 253 EYXQXIPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 146
++ + +P++C +S +SL + +Y +C+R + YAS
Sbjct: 470 KFRELLPILCSKS-LSLHTRGRIYSSCVRGALLYAS 504
>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 223 RRSKMSLRNKVTLYKTCIRPVMTYASVVVXH 131
+R+ + ++ + Y TCIRPV YA V H
Sbjct: 1213 KRANIKVKELLLFYLTCIRPVTEYACPVFHH 1243
>SB_4872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 223 RRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIH-XKSFQVIQSRFCRI 74
+RS ++ V+ ++TC+RP+ YA V + + S + +Q R RI
Sbjct: 276 KRSGLAKSGLVSFFRTCVRPITEYACPVYHDSLPSYLSNSLEQVQRRALRI 326
>SB_59601| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 370
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWFV 50
+ K+++ K+T+Y+ CI + Y S AR K R R +G W +
Sbjct: 172 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHWRI 230
Query: 49 R 47
+
Sbjct: 231 K 231
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = -2
Query: 232 MICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXK 110
++ +R+ + + + + Y TC+RP++ Y + + HA + K
Sbjct: 276 VLLKRTIVPVSDIIGFYDTCVRPILEYCAPLSYHAIPAYLK 316
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 151 ASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWFVRNVDLHDDLDLV 14
A VVV + + K + +Q + A W+ ++V L DDLD V
Sbjct: 454 AHVVVVNCIHLRAKRVEAVQKHLQQAFTEAAWYQQSVLLLDDLDHV 499
>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
Length = 652
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -2
Query: 253 EYXQXIPMICRRSKMSLRNKVTLYKTCIRPVMTYA 149
++ + +P++ +S +SLR + +Y +C+R M YA
Sbjct: 545 KFKELLPVLSSKS-LSLRTRGKVYSSCVRSAMLYA 578
>SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = -2
Query: 184 YKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPWFVRNVDLHDDLDLVSIS 5
+ I+P+M Y V H + ++Q R RI W+ ++ L ++L++ +
Sbjct: 3 FNALIQPLMDYCITVWGDNLIEHDNTILLLQKRAARIIAYKKWYDHSMALFEELNIEPFT 62
Query: 4 K 2
K
Sbjct: 63 K 63
>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
Length = 1283
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 688 KTFHDITMYLTHTHTQTCIYTVLVYRFHQSV 596
KTFH++T L+ + + YRFH SV
Sbjct: 52 KTFHELTTILSGFYKPKVLEVAETYRFHHSV 82
>SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 226
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 8 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 64
>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 558 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 614
>SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 223
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 8 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 64
>SB_32142| Best HMM Match : RVT_1 (HMM E-Value=2.29953e-42)
Length = 590
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 520 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 576
>SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 89 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 145
>SB_12945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 88 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 144
>SB_8735| Best HMM Match : RVT_1 (HMM E-Value=2.00386e-43)
Length = 661
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 469 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 525
>SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 89 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLHTFHMRCLRRILGIHW 145
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 8 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 64
>SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43)
Length = 458
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 309 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 365
>SB_53437| Best HMM Match : DUF1126 (HMM E-Value=5.1)
Length = 92
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 8 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 64
>SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 226
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 8 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 64
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 2400 VWENKKLTISTKITVYRACILSTLLYGSEPWTTYAR-QEKRLNTFHMRCLRRILGIHW 2456
>SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 328
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 89 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLHTFHMRCLRRILGIHW 145
>SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 290
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 141 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 197
>SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 280
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 89 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 145
>SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 406
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 8 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 64
>SB_27484| Best HMM Match : RVT_1 (HMM E-Value=0.035)
Length = 322
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 238 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 294
>SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 124 VWENKKLTISTKITVYRACILSTLLYGSKSWTTYAR-QEKRLNTFHMRCLRRILGIHW 180
>SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 416
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 198 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 254
>SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 348
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 141 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 197
>SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 223 RRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIH-XKSFQVIQSRFCRI 74
+R+ + Y TCIRP+M YA V ++ + + ++I+ R RI
Sbjct: 331 KRASLGSEELHQFYLTCIRPIMEYACPVFHNSLPDYLSQDLEIIRRRALRI 381
>SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 8 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 64
>SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43)
Length = 677
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ C+ + Y S AR K R R +G W
Sbjct: 480 VWENKKLTISTKITVYRACVLSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 536
>SB_777| Best HMM Match : DUF1126 (HMM E-Value=5.1)
Length = 173
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 89 VWENKKLTISTKITVYRACILNTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 145
>SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 214 KMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIAVGAPW 56
K+++ K+T+Y+ CI + Y S AR K R R +G W
Sbjct: 129 KLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLRRILGIHW 180
>SB_1986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 23.4 bits (48), Expect(2) = 6.8
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2
Query: 638 CLCVCVCQIH 667
C+CVCVC ++
Sbjct: 85 CVCVCVCGVY 94
Score = 23.0 bits (47), Expect(2) = 6.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 635 ACLCVCVC 658
AC CVCVC
Sbjct: 82 ACTCVCVC 89
>SB_52991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 586 SI*PQIDEIDKLTQYKCMFVCVCVSNTW 669
SI P+IDE+D + + C+ + C++ +W
Sbjct: 136 SILPKIDELDGVVAHNCVDI-ACITESW 162
>SB_35765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 193 VTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIA 71
+T+Y++ IR V+ YAS V + + + +Q R +IA
Sbjct: 62 ITVYRSLIRSVIEYASAVFANLPNYLSDALENVQRRALKIA 102
>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
Length = 530
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSR-FCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R CRI +G W
Sbjct: 312 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLCRI-LGIHW 368
>SB_15881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 223 RRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIH-XKSFQVIQSRFCRI 74
+RS + V+ ++TC+RP+ YA V + + S + +Q R RI
Sbjct: 670 KRSGLGKSVLVSFFRTCVRPITEYACPVYHDSLPSYLSNSLEQVQRRGLRI 720
>SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSR-FCRIAVGAPW 56
+ K+++ K+T+Y+ CI + Y S AR K R CRI +G W
Sbjct: 192 VWENKKLTISTKITVYRACILSTLLYGSESWTTYAR-QEKRLNTFHMRCLCRI-LGIHW 248
>SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 193 VTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIA 71
+T+Y++ IR V+ YAS V + + + +Q R +IA
Sbjct: 62 ITVYRSLIRSVIEYASAVFANLPNYLSDALENVQRRALKIA 102
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -2
Query: 223 RRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSR 86
++ + + + VT+Y + IRP+ YASV+ + ++ + IQ R
Sbjct: 4157 KKCGVPVEDMVTVYCSLIRPITEYASVIFSNIPCYLSEALEKIQRR 4202
>SB_9529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 586 SI*PQIDEIDKLTQYKCMFVCVCVSNTW 669
SI P+IDE+D + + C+ + C++ +W
Sbjct: 136 SILPKIDELDGVVAHNCVDI-ACITESW 162
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = -2
Query: 229 ICRRSKMSLRNKVTLYKTCIRPVMTYASVVVXHAARIHXKSFQVIQSRFCRIA 71
+ ++ + + +T+Y++ IR V+ YAS + + + +Q R +IA
Sbjct: 72 VLKKCGLDAKELITVYRSLIRSVIEYASAAFANLPNYLSDALENVQRRALKIA 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,810
Number of Sequences: 59808
Number of extensions: 325455
Number of successful extensions: 777
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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