Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0759
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44744 Cluster: OrfR; n=4; Borrelia burgdorferi group|R...    36   0.95 
UniRef50_Q8I2L3 Cluster: Putative uncharacterized protein PFI146...    33   6.7  

>UniRef50_Q44744 Cluster: OrfR; n=4; Borrelia burgdorferi group|Rep:
           OrfR - Borrelia burgdorferi (Lyme disease spirochete)
          Length = 179

 Score = 35.9 bits (79), Expect = 0.95
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
 Frame = -1

Query: 585 IK*YFSCV-LFYCCHSILMEFIFYWITLIKLCKPLMAILLCCIS*QSKAGRWHLLRQLLA 409
           I+ Y SC  LF     I++    Y+I+L  +    + + +C I  +   G + ++  ++ 
Sbjct: 41  IRYYLSCTYLFMFLARIMIALFVYYISLSNI---FIFLFICFIDIKVLLGNFSVISNIVL 97

Query: 408 FQEF------SFKILNQ*IYIIFRFFQLIHLL*SIGRKRQQNYCYVYKEN 277
           F EF        KI    IY  + FF+ I +        +   C++YKEN
Sbjct: 98  FYEFRKDSICERKIFKSEIYF-YEFFEKIFIAREFEFNNKNYLCFLYKEN 146


>UniRef50_Q8I2L3 Cluster: Putative uncharacterized protein PFI1460c;
           n=4; Plasmodium|Rep: Putative uncharacterized protein
           PFI1460c - Plasmodium falciparum (isolate 3D7)
          Length = 350

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 74  INRHYTNAF-HDYISIVPMLQLNLVSKMSLVIFLKYSTF 187
           I  +Y   F HD I I+P L+L ++ K S++IFL    F
Sbjct: 137 IKENYIAIFTHDIIQILPFLKLLIIQKYSILIFLSKDNF 175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,550,114
Number of Sequences: 1657284
Number of extensions: 10157156
Number of successful extensions: 18364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18362
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)