Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0759
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   1.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   1.9  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   7.8  

>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = +2

Query: 83  HYTNAFHDYISIVPMLQLNLVSKMSLVIFLK 175
           +Y N++ D+IS++ M +++ +  +S+ IFLK
Sbjct: 38  YYKNSYSDFISVLQMYKVH-IRMVSIYIFLK 67


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 380 FNILKENS*KANNCLNKCHLPAF 448
           FNI KE     N CL++C+L A+
Sbjct: 251 FNIFKEKEILRNICLDECYLKAY 273


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 447 KAGRWHLLRQLLAFQEFSF-KILNQ 376
           K G W  L +L A +EF+F KIL++
Sbjct: 138 KTGSWQYLSRLAATKEFAFMKILHE 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,096
Number of Sequences: 5004
Number of extensions: 49106
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)