Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0759
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.5  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 545 IQSLWSSYFIGSR*SSYVNP*WLYYYA 465
           +Q+L +SY I S    Y NP  + YYA
Sbjct: 52  LQNLGASYDIESNSHQYKNPIIVMYYA 78


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 609 TSSKLLLIIK*YFSCVLFYCCHSILM 532
           T+S  + +I  YF+C++F    S+++
Sbjct: 249 TTSDAVPLIGSYFNCIMFMVASSVVL 274


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 609 TSSKLLLIIK*YFSCVLFYCCHSILM 532
           T+S  + +I  YF+C++F    S+++
Sbjct: 249 TTSDAVPLIGSYFNCIMFMVASSVVL 274


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 609 TSSKLLLIIK*YFSCVLFYCCHSILM 532
           T+S  + +I  YF+C++F    S+++
Sbjct: 249 TTSDAVPLIGSYFNCIMFMVASSVVL 274


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 609 TSSKLLLIIK*YFSCVLFYCCHSILM 532
           T+S  + +I  YF+C++F    S+++
Sbjct: 317 TTSDAVPLIGSYFNCIMFMVASSVVL 342


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 467 HNNIAIRGLHSLINVIQ*NMNSIRIE 544
           HN  + +GL+ L N+I+ N +S   E
Sbjct: 351 HNIYSEKGLNILGNIIEGNADSYNTE 376


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 467 HNNIAIRGLHSLINVIQ*NMNSIRIE 544
           HN  + +GL+ L N+I+ N +S   E
Sbjct: 351 HNIYSEKGLNILGNIIEGNADSYNTE 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,489
Number of Sequences: 438
Number of extensions: 3550
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)