Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0758
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.20 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   1.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   5.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   5.8  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   7.7  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 195 RSLTDARDRTLTLNNGFSIHACG 263
           +SL + +D+ LTLN  F +H CG
Sbjct: 175 KSLAEMQDKLLTLNKKFELHPCG 197


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = -1

Query: 184 YPIIFLD-SFR-GSHKLAQKENPLLI 113
           +PI  LD S R GS+KL++KENP LI
Sbjct: 893 FPIDNLDMSMRTGSYKLSEKENPKLI 918


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 316 ENIIKYIKILGTRMFSLIPHACIENPLLRVNVLSRASVRLLT*IYPIIFLD 164
           EN+   I +L  ++  L      ++P       +   +RLLT + PIIF D
Sbjct: 61  ENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNCMRLLTRLMPIIFED 111


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 642 NNRYNEMVRLNSDIKPSTNNSNHSPS 565
           ++R +E++ LN + KP+ +N NH  S
Sbjct: 874 SDRASELLSLNGENKPAESNLNHLTS 899


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -1

Query: 208 SVRLLT*IYPIIFLDSFRGSHKLAQKENPLLINTSLNVL 92
           S +++T  YP++  +S R +  L  K+N  +I+ + N++
Sbjct: 330 SAQIVTLPYPLLLQESARNALNLTLKDNICIIDEAHNLI 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,098
Number of Sequences: 5004
Number of extensions: 45971
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)