Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0758
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466...    28   6.0  
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436...    28   6.0  

>09_04_0162 +
           15245354-15245458,15245558-15245629,15245793-15246617,
           15247787-15248474,15248805-15248821
          Length = 568

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = -1

Query: 271 SLIPHACIE-NPLLRVNVLSRASVRL 197
           +L+P A +E NPLLR N+LS+  ++L
Sbjct: 435 TLMPAAVLESNPLLRFNILSQKMIKL 460


>09_02_0108 -
           4358051-4358645,4358722-4359137,4360307-4360903,
           4361068-4361139,4361236-4361370,4361485-4361585,
           4362719-4362863
          Length = 686

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = -1

Query: 271 SLIPHACIE-NPLLRVNVLSRASVRL 197
           +L+P A +E NPLLR N+LS+  ++L
Sbjct: 504 TLMPAAVLESNPLLRFNILSQKMIKL 529


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,882
Number of Sequences: 37544
Number of extensions: 233957
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)