Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0758
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88311-5|AAB42343.1|  531|Caenorhabditis elegans Udp-glucuronosy...    28   7.1  

>U88311-5|AAB42343.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein25 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 539 FLVQSSYGRWLGTFQSNLISISRRFSHTN*FRIIIILLSYK 417
           F    SYGR LG  Q NLI I    S +  F I +I   +K
Sbjct: 474 FPQMDSYGRQLGFIQRNLIDIYAAISLSYLFVISLIYFVFK 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,344
Number of Sequences: 27780
Number of extensions: 245755
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)