Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0757
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...   103   2e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    46   7e-06
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    42   8e-05
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    36   0.005
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    32   0.067
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    30   0.36 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.36 
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    30   0.36 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    29   0.83 
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   4.4  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   7.7  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  103 bits (248), Expect = 2e-23
 Identities = 57/130 (43%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
 Frame = +2

Query: 227 FAKDFLAGGTXXXXXXXXXXXIXRVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 403
           F  DF+ GG            I RVKLL+Q Q  + +      RYKGI + F R   E+G
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86

Query: 404 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGALTRRRSSGRYFXXXXXXXXXXXXT 583
           ++S WRGN ANV+RYFPTQALNFAFKDK+K++F G    R    ++F             
Sbjct: 87  VISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGAA 145

Query: 584 SLCFVYPLDF 613
           SL FVY LD+
Sbjct: 146 SLLFVYSLDY 155



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 20/93 (21%), Positives = 37/93 (39%)
 Frame = +2

Query: 227 FAKDFLAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 406
           FA +  +GG            +   +  L     S +   ++++ G+VD + +  +  GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191

Query: 407 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 505
              +RG   +V+     + L F   D  K V L
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVL 224


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 26/85 (30%), Positives = 42/85 (49%)
 Frame = +2

Query: 242 LAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 421
           L+GG            + R+K++ QVQ+       ++ Y  +    V+I   +GL+ F+R
Sbjct: 25  LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77

Query: 422 GNFANVIRYFPTQALNFAFKDKYKQ 496
           GN  N +R FP  A+ FA  +  KQ
Sbjct: 78  GNGTNCLRAFPYGAVQFATFNMLKQ 102



 Score = 32.3 bits (70), Expect = 0.067
 Identities = 24/92 (26%), Positives = 39/92 (42%)
 Frame = +2

Query: 197 KMSNLADPVAFAKDFLAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDA 376
           K  + AD  AF K FL G T                +L +   V++       YK I  A
Sbjct: 217 KFFSNADLTAFQKLFLGGFTGIIGQTLTFP----ADVLRRRFQVNRIPGIGHNYKNIKSA 272

Query: 377 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 472
              I K +G+  F+RG  +N+++  P  ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 26/91 (28%), Positives = 42/91 (46%)
 Frame = +2

Query: 233 KDFLAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 412
           K  +AGGT           + RVK+L Q  H S +  A  R+ G+  A   I    GL  
Sbjct: 19  KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77

Query: 413 FWRGNFANVIRYFPTQALNFAFKDKYKQVFL 505
            ++G+ A + R FP   + F   ++ ++V +
Sbjct: 78  LYQGHTATLYRVFPYAGIKFVAYEQVRRVLI 108


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 28/106 (26%), Positives = 42/106 (39%)
 Frame = +2

Query: 215 DPVAFAKDFLAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 394
           D + F   F AG             +  VK  +Q+  V K       Y G  D   +I K
Sbjct: 4   DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57

Query: 395 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGALTRRRSS 532
            +G    +RG    ++   P +AL FA  D Y +++     R+ SS
Sbjct: 58  NEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSS 103



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 353 RYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGALTR 520
           +Y G VD F +I K++ +L+ + G  A + R+    A  F    K +     A +R
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSLTPASSR 195


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 32.3 bits (70), Expect = 0.067
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +2

Query: 299 VKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAF 478
           ++  LQ Q  S   A    Y G +D F +  K +G    ++G   N+++  P+ A+++  
Sbjct: 359 IRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLV 415

Query: 479 KDKYKQ 496
            +  K+
Sbjct: 416 YENCKK 421



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +2

Query: 239 FLAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSF 415
           +LAGG            +  +K  +Q   +S+     Q  K I+ +  + + K  G+  +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287

Query: 416 WRGNFANVIRYFPTQALNFAFKDKYKQVFLGALTRR 523
           +RG    ++  FP  A +    +  K+ ++G L  R
Sbjct: 288 YRGVLVGILGMFPYSATDLGTFEGLKRTWIGILASR 323


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 10/55 (18%), Positives = 27/55 (49%)
 Frame = -1

Query: 683 FPRPENSRWPSPLPTSAARPVTCESRGGTRSTERWLRRHHRRPDYQRSNAQNCVF 519
           + + +NS+W SP  ++  +P     +   +S+ R     +++P + R    + ++
Sbjct: 106 YNKGKNSKWSSPFASTTKKPQESSEKYSKKSSTRKKEHFNKKPSFPRDTEYSHIY 160


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 329 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 472
           S  I    +Y G++  F  +  EQG++  + G  A+++R  P   + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 332 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 499
           + ++A + YK  +    +I  + GLL FW G    + R   +  + F   +K  ++
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKVMEI 287


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 341 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 439
           A    Y    DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 76  YEITPNLLFKNQELVFRDPPSACAATPTSTY 168
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 365 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 457
           +++    + + +GL  F+RG +  V  Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,794
Number of Sequences: 5004
Number of extensions: 49046
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)