Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0757
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   193   1e-51
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   193   1e-51
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.17 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  193 bits (471), Expect = 1e-51
 Identities = 93/138 (67%), Positives = 101/138 (73%)
 Frame = +2

Query: 200 MSNLADPVAFAKDFLAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDAF 379
           MS LADPVAFAKDFLAGG            I RVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 380 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGALTRRRSSGRYFXXXXX 559
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG + +     RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 560 XXXXXXXTSLCFVYPLDF 613
                  TSLCFVYPLDF
Sbjct: 121 SGGAAGATSLCFVYPLDF 138



 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 622 TGLAADVGKGDGQREFSGLG 681
           T LAADVGK  G+REF+GLG
Sbjct: 141 TRLAADVGKAGGEREFTGLG 160



 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 356 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 445
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 347 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 484
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  193 bits (471), Expect = 1e-51
 Identities = 93/138 (67%), Positives = 101/138 (73%)
 Frame = +2

Query: 200 MSNLADPVAFAKDFLAGGTXXXXXXXXXXXIXRVKLLLQVQHVSKQIAADQRYKGIVDAF 379
           MS LADPVAFAKDFLAGG            I RVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 380 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGALTRRRSSGRYFXXXXX 559
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG + +     RYF     
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120

Query: 560 XXXXXXXTSLCFVYPLDF 613
                  TSLCFVYPLDF
Sbjct: 121 SGGAAGATSLCFVYPLDF 138



 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 622 TGLAADVGKGDGQREFSGLG 681
           T LAADVGK  G+REF+GLG
Sbjct: 141 TRLAADVGKAGGEREFTGLG 160



 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 356 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 445
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 347 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 484
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 620 TCESRGGTRSTERWLRRHHRRPDYQRSNAQNC 525
           TC+  G T ST+  L+RH  +  +Q  N+  C
Sbjct: 373 TCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVC 404


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 464 LNFAFKDKYKQVFLGALTRRR 526
           +N+ + DKYK   LGA+   +
Sbjct: 131 INWEYLDKYKPTPLGAVATEK 151


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 569 HHRRPDYQRSNAQNC 525
           H R PD+  ++ QNC
Sbjct: 312 HLRDPDHHSTDIQNC 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,963
Number of Sequences: 438
Number of extensions: 3805
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)