Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0756
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    29   0.84 
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    27   3.4  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    26   4.5  

>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 436 RAPVGRAEALQLYRVQSDADYEC*YSATSWPPHSNPPPQTNST 564
           R P  RA  L LY V          S++S PP S+PPP+   T
Sbjct: 12  RLPFRRAPTLPLYNVPVRRSIS---SSSSIPPSSSPPPRLTIT 51


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 127 RVSNFGVDCICLSAISICLKTLLDAVQVQKSGPSRTEEA 11
           ++S  G  C+ ++ +S CL    +  Q  K   S T+EA
Sbjct: 134 QISTIGKQCLAVALLSSCLAGCYELQQNSKKIKSATQEA 172


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +2

Query: 65  RFETNGNRRQTDAIDTKITDPKRINT*GIRRNARVXXXXXXXXXXXRLVKXPKSEGAAPS 244
           R   +  RR+   ID  ++  + I +  +  N R             L +  +S    P 
Sbjct: 81  RIAKSFERRRCGHIDEALSPSECIQS-VVNINGRNKHRYVVATQDPELRQALRSVPGVPL 139

Query: 245 VQELRTYILKEPAATFDLLQNHNTSLDQM 331
           +   R+ ++ EPA+   LL+ HN    QM
Sbjct: 140 IYMKRSVVILEPASRATLLEKHNKESVQM 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,374
Number of Sequences: 5004
Number of extensions: 54044
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)