Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0756
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)                      31   1.2  
SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_6779| Best HMM Match : Lectin_C (HMM E-Value=2.2e-05)               29   2.7  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_57280| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)               28   8.2  

>SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)
          Length = 654

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +2

Query: 218 PKSEGAAPSVQELRTYILKEPAATFDLLQNHNTSLDQMLQEDVSGKRK----FKSTLTGE 385
           P+  G  P   E     + EP  TF+ L     S  +M  E V G R     FK  +T  
Sbjct: 550 PEPTGDEPEDAEFEAPKVYEPVETFESLNERLDSFVEMYNETVRGGRMDLVFFKDAMTHL 609

Query: 386 VNRVSAVLADPR 421
           V ++S ++  PR
Sbjct: 610 V-KISRIIRTPR 620


>SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = -2

Query: 205 SCSXA--RPRSLPSDSCITTNA-LSVNPFRVSNFGVDCICLSAISICLK---TLLDAVQV 44
           SCS A   P + P ++ + +   L V     + FG++ IC++ + ICL    T L  + +
Sbjct: 358 SCSFAFMLPVATPPNAIVFSYGHLKVKDMAKAGFGMNVICITVLLICLHVYGTSLFGLAL 417

Query: 43  QKSGPS 26
            ++GPS
Sbjct: 418 SRTGPS 423


>SB_6779| Best HMM Match : Lectin_C (HMM E-Value=2.2e-05)
          Length = 181

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -2

Query: 238 SCSLGLGXFYKSCSXARPRSLPSDSCITTNALSVNPFRVSNFGVDCICLSA--ISICLKT 65
           S S  +G  YK  S            +  N  S     + N G DC CLSA  +S+CL  
Sbjct: 110 SQSYWIGLRYKGGSFVWANDEKIPKALLENLTSSKEADLINEGKDCFCLSARNLSLCLSC 169

Query: 64  LLD 56
            +D
Sbjct: 170 TVD 172


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 308  HNTSLDQMLQEDVSGKRKFKSTLTGEVNRVSAVLADPRAAL 430
            H TSL   LQ+D+ GK  F   L G+   +   L + ++ L
Sbjct: 1998 HYTSLSDNLQKDIKGKDMFLEELQGKSRMLEEELHEAKSKL 2038


>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 499 EC*YSATSWPPHSNPPPQTNSTSALXLTGPSSFQLQKPPGK 621
           +C     + PP + PPP TN+T A+  T P++      P K
Sbjct: 389 KCEVPCPTSPPTTQPPPMTNAT-AIPNTIPTNIPTTAKPAK 428


>SB_57280| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
          Length = 259

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 381 PVNVDLNFLLPLTSSCNIWSRLVLWFCRRSN 289
           P +  ++   P    CN++  +  WFCR S+
Sbjct: 223 PESSMISIARPCIPQCNVYGNIPAWFCRTSS 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,588,157
Number of Sequences: 59808
Number of extensions: 461782
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)