Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0756
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z49132-12|CAA88990.3|  931|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z48716-7|CAA88602.3|  931|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    28   7.2  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    28   7.2  

>AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical
           protein C49D10.10 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = -2

Query: 640 NIIVFLVCRAASEAGTKMDPLXSRQTWNSSAAEDSNGEATRLRCINIRNQRQIGPDIAEG 461
           N++   +  A    G   D    ++ W +   EDS     RLRC+  ++     PD    
Sbjct: 488 NVLAHEIGHAFDHTGINYDDAGQQRIWLTP--EDSEEYGKRLRCLLRQHDEYDDPDFGRN 545

Query: 460 LRPGQLVHASQSSSRVG 410
           L   + +H   S+ R G
Sbjct: 546 LNGSKTLH-EISADRFG 561


>Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical
           protein C34C6.6b protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 118 NFGVDCICLSAISICLKTLLDAVQVQKSG 32
           N G+ C+ LS+    LK  L A+++QK G
Sbjct: 431 NLGISCMQLSSYDEALKHFLSALELQKGG 459


>Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical
           protein C34C6.6a protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 118 NFGVDCICLSAISICLKTLLDAVQVQKSG 32
           N G+ C+ LS+    LK  L A+++QK G
Sbjct: 433 NLGISCMQLSSYDEALKHFLSALELQKGG 461


>Z49132-12|CAA88990.3|  931|Caenorhabditis elegans Hypothetical
           protein F59B10.1 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = -2

Query: 613 AASEAGTKMDPLXSRQTWNSSAAEDSNGEATRLRCINIRNQRQIGPDIAEGLRPGQLVHA 434
           ++S +    DP+ S   +N  A  + NG  T     NI++Q Q+     +  R G L+  
Sbjct: 92  SSSSSSHHSDPMFSPNEFNGYAGANDNGNQT---MNNIQSQ-QLSQQQHQQTRGGNLMMP 147

Query: 433 SQSSSRVGQHGTHSVHFTGQRG 368
            QSS        ++  F  Q G
Sbjct: 148 QQSSIHAQMQNMNAPQFWSQPG 169


>Z48716-7|CAA88602.3|  931|Caenorhabditis elegans Hypothetical
           protein F59B10.1 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = -2

Query: 613 AASEAGTKMDPLXSRQTWNSSAAEDSNGEATRLRCINIRNQRQIGPDIAEGLRPGQLVHA 434
           ++S +    DP+ S   +N  A  + NG  T     NI++Q Q+     +  R G L+  
Sbjct: 92  SSSSSSHHSDPMFSPNEFNGYAGANDNGNQT---MNNIQSQ-QLSQQQHQQTRGGNLMMP 147

Query: 433 SQSSSRVGQHGTHSVHFTGQRG 368
            QSS        ++  F  Q G
Sbjct: 148 QQSSIHAQMQNMNAPQFWSQPG 169


>Z82273-1|CAB54978.2|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 511 SATSWPPHSNPPPQTNSTSALXLTGPSSFQLQKP 612
           + ++WP H+  P  T + + +    P ++  Q+P
Sbjct: 457 TTSTWPSHTTTPTTTTAAAPIAAVAPQTYTEQQP 490


>Z82263-7|CAJ76937.1|  565|Caenorhabditis elegans Hypothetical
           protein F56F12.1 protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = +1

Query: 511 SATSWPPHSNPPPQTNSTSALXLTGPSSFQLQKP 612
           + ++WP H+  P  T + + +    P ++  Q+P
Sbjct: 457 TTSTWPSHTTTPTTTTAAAPIAAVAPQTYTEQQP 490


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 118 NFGVDCICLSAISICLKTLL 59
           + G+ C CLS +SICL  L+
Sbjct: 6   HIGLACFCLSFVSICLNLLI 25


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 118 NFGVDCICLSAISICLKTLL 59
           + G+ C CLS +SICL  L+
Sbjct: 6   HIGLACFCLSFVSICLNLLI 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,890
Number of Sequences: 27780
Number of extensions: 334736
Number of successful extensions: 939
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)