Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0756
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.68 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   3.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +1

Query: 526 PPHSNPPPQTNSTSALXLTGPSSFQLQKPPGKRGK 630
           PP SNP     S   L L  P    L  PP KR K
Sbjct: 437 PPSSNPVSPVPSPDPLDLAIPVRETLILPPRKRCK 471


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 95  FVCDFHLSQNVIRCCSSSEI 36
           FVCDF+++ +V   CS+S I
Sbjct: 257 FVCDFYIAMDV--TCSTSSI 274


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 163 CITTNALSVNPFRVSNFGVDCICLSAISICLKTLLDAVQV 44
           CI  NA+++   ++    V  IC +   I  +T+ D  +V
Sbjct: 11  CICVNAMTIEELKIQLHDVQEICKTESGIDQQTVDDINEV 50


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 54  LFKFRNQVLHVL 19
           ++K+ NQ+LH+L
Sbjct: 93  IYKWNNQILHIL 104


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 54  LFKFRNQVLHVL 19
           ++K+ NQ+LH+L
Sbjct: 76  IYKWNNQILHIL 87


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 163 CITTNALSVNPFRVSNFGVDCICLSAISICLKTLLDAVQV 44
           CI  NA+++   ++    V  IC +   I  +T+ D  +V
Sbjct: 11  CICVNAMTIEELKIQLRDVQEICKAESGIDQQTVDDINEV 50


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 336 CNIWSRLVLWFCRRS 292
           C+IW  + +W C  S
Sbjct: 138 CSIWLAVDVWMCTAS 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,142
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)