Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0756
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C...    33   0.24 
At3g15115.1 68416.m01912 expressed protein                             28   5.1  
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P...    28   6.7  
At3g11480.1 68416.m01400 S-adenosyl-L-methionine:carboxyl methyl...    28   6.7  
At5g67020.1 68418.m08449 expressed protein                             27   8.9  
At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphat...    27   8.9  
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    27   8.9  
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi...    27   8.9  
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi...    27   8.9  

>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GI:2582800
           from [Medicago sativa]
          Length = 380

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 532 HSNPPPQTNSTSALXLTGPSSFQLQKPPGKRG 627
           H NPP  + S SA   T P   +L KPP K G
Sbjct: 40  HLNPPVSSTSPSAASPTSPFCLRLLKPPAKLG 71


>At3g15115.1 68416.m01912 expressed protein
          Length = 339

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 236 APSVQELRTYILKEPAATFDLLQNHNTSLDQMLQEDVSGKRKFKSTLTGEVNRVSAVLAD 415
           +P+ + LR  +         +L++ +   ++  +ED   +RK   T TG+ NR +AV+  
Sbjct: 248 SPNRKTLRKTLSSIETKDIQMLKDFHIETEKKQEEDEEKQRKVPCTTTGK-NRSTAVVGQ 306

Query: 416 P 418
           P
Sbjct: 307 P 307


>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 944

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 433 RRAPVGRAEALQLYRVQSDADYEC*YSATSWPPHSNPPPQTNSTSALXLTGPSSFQLQKP 612
           RR   G AE  Q + +   +  E     +S+PP S   P T S S     GPS+  +  P
Sbjct: 391 RRPSPGLAETSQAHPIPEMSAKEP--KQSSFPPPSPRKPFTRSASKSCGVGPSN-PICNP 447

Query: 613 PGKRGK 630
           P ++ K
Sbjct: 448 PSRKSK 453


>At3g11480.1 68416.m01400 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to SAM:benzoic
           acid carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus] and to
           SAM:salicylic acid carboxyl methyltransferase
           (SAMT)[GI:6002712][Clarkia breweri]
          Length = 379

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 239 PSVQELRTYILKEPAATFDLLQNHNTSLDQMLQED 343
           P+VQEL+  I KE +   + L++H   L    +ED
Sbjct: 284 PNVQELKEVIQKEGSFEINELESHGFDLGHYYEED 318


>At5g67020.1 68418.m08449 expressed protein
          Length = 394

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 166 SRWVSFWAGPGCKTCKIXQVRGSSSVSTRTEDLHTE 273
           SRWV FW+      C+      SSS S+  +   TE
Sbjct: 246 SRWVEFWSDAAVDRCRRNSASTSSSSSSSPDLPKTE 281


>At5g06340.1 68418.m00710 diadenosine 5',5'''-P1,P4-tetraphosphate
           hydrolase, putative similar to diadenosine
           5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
           angustifolius] GI:1888557, [Hordeum vulgare subsp.
           vulgare] GI:2564253; contains Pfam profile PF00293:
           NUDIX domain
          Length = 227

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 160 ITTNALSVNPFRVSNFGVDCICLSAISICLKTLLDAVQVQKSGPSRTEEAP 8
           I  +A+SV+    S+F V   CL   S+     L  + V  S P+RT E+P
Sbjct: 9   IGKSAISVH-LDFSSFPVKFSCLKQFSVSSPKPLVVLSVALSSPARTVESP 58


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 511 SATSWP-PHSNPPPQTNSTSALXLTGPSSFQLQKPP 615
           S +SWP P  +P      T +L    PSS + ++PP
Sbjct: 201 STSSWPLPSRSPSRARRPTPSLSSLSPSSSRARRPP 236


>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 261 VLSSCTDGAAPSDLGNFTSLAAXPGPEAYPATRALRRMP 145
           +LS CTDG +  D+G    L A  G   +PA   L +MP
Sbjct: 650 LLSCCTDGRSKLDMGFCGQLMASTG---HPAHMFLLKMP 685


>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 261 VLSSCTDGAAPSDLGNFTSLAAXPGPEAYPATRALRRMP 145
           +LS CTDG +  D+G    L A  G   +PA   L +MP
Sbjct: 650 LLSCCTDGRSKLDMGFCGQLMASTG---HPAHMFLLKMP 685


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,199
Number of Sequences: 28952
Number of extensions: 316291
Number of successful extensions: 926
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)