Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0754
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0344 + 22540436-22540737,22541304-22543545                       29   2.7  
08_01_0626 - 5445676-5446687,5447099-5447430                           29   3.5  
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    29   3.5  
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395...    29   4.7  
11_06_0707 + 26467214-26470309                                         28   8.2  
11_06_0698 + 26385989-26389090                                         28   8.2  
08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586           28   8.2  

>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 528 PDGLRGFIALVGRRAYGPPDGEWLPS-PIDLSNARGR 421
           P+ + G  ALVG R    P   WLPS P++ S   GR
Sbjct: 22  PELMDGSEALVGSRDLERPRSPWLPSEPVNCSGGLGR 58


>08_01_0626 - 5445676-5446687,5447099-5447430
          Length = 447

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
 Frame = +2

Query: 86  IRTESLKYLTSRQNST*S----ACKSGANPNSCYRRATKCILTELVALSGRGGT------ 235
           + +E L Y+  R +S  S    AC++   P S    AT+C L E +  SG   +      
Sbjct: 100 VTSELLDYIACRASSLKSIRLIACRNFWEP-SLAELATQCPLLEEIECSGNKMSSEFLVY 158

Query: 236 --RRRPQLKRTYAQLRYF 283
             R RPQLKR    +R+F
Sbjct: 159 VGRARPQLKRLKIHMRWF 176


>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 216 CQVGEVHDVGRS*NERTLSCDISVEMFASCKIKKII 323
           C  G+ H   RS ++R L CD++++M +  +  KII
Sbjct: 79  CSKGQEHVFVRSYSDRLLKCDLTLDMLSENEKIKII 114


>12_02_0065 -
           13109652-13110746,13110843-13111762,13139462-13139528,
           13139607-13139675,13139877-13140020,13140100-13140171,
           13140316-13140387,13140466-13140558,13140655-13140726,
           13140809-13140925
          Length = 906

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 299 GKHFDG---NIAAERTFVLAAAYVVYLPDLTEPQAL*VYIL*HDG 174
           GK F+    N+  E  F  + AYV YL  +  P+   VY++  DG
Sbjct: 82  GKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDKKVYVIGEDG 126


>11_06_0707 + 26467214-26470309
          Length = 1031

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 120 LLVKYFNDSVRMLQFPWHAWTCLSK 46
           L  K FND     +F  HAW C+SK
Sbjct: 210 LAQKIFNDKKLEGRFDHHAWACVSK 234


>11_06_0698 + 26385989-26389090
          Length = 1033

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 120 LLVKYFNDSVRMLQFPWHAWTCLSK 46
           L  K FND     +F  HAW C+SK
Sbjct: 210 LAQKIFNDKKLEGRFDHHAWACVSK 234


>08_01_0503 + 4364678-4364976,4365320-4365595,4366091-4366586
          Length = 356

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +3

Query: 522 HQETCRQLVLCSIRVV-----EYLCKRXLKMLLLQKTADLYIA 635
           H E  R++ +C+  V      E +C R L +    +T DLYIA
Sbjct: 95  HHENYRKIPMCTTPVAPAEETESMCGRPLGLAFHDRTGDLYIA 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,467
Number of Sequences: 37544
Number of extensions: 394350
Number of successful extensions: 889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)