Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0754
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  31   1.2  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     28   6.3  
SB_40705| Best HMM Match : Hormone_5 (HMM E-Value=5.7)                 28   8.4  

>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 362 SQTHISVYSNQLLAVGSGLALPLALLRSMGDGNHSPSGGPYARLPTRAIKP 514
           ++  + +  N +    SG+  PLA   S  D  H P GGP A  PT    P
Sbjct: 17  TEKDLKMNGNTIAPDSSGIFSPLASSTSASDSRHRPVGGP-AYSPTERAYP 66


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 460  PLTIRWAVCSSAYKGNKTSQPIRKH 534
            PL IRW +  +   GN T  PI++H
Sbjct: 1221 PLDIRWLIAGANSTGNLTFTPIKQH 1245


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 116  SRQNST*SACKS---GANPNSCYRRATKCI 196
            SRQN+T   C +     NPNSC+ +AT CI
Sbjct: 1887 SRQNNTREGCATMDQHCNPNSCHEQAT-CI 1915


>SB_40705| Best HMM Match : Hormone_5 (HMM E-Value=5.7)
          Length = 282

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +2

Query: 398 LAVGSGLALPLALLRSMGDGNHSPSGGPYARLPTRAIKPRNPSG 529
           LA   G+ LP   L       H   GG   R   R I+PRN  G
Sbjct: 196 LAWRFGVKLPFVKLFGSAVAGHFVGGGGVNRFADRRIRPRNARG 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,969,460
Number of Sequences: 59808
Number of extensions: 454057
Number of successful extensions: 1085
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)