Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0754
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047652-4|AAC04392.2| 399|Caenorhabditis elegans Hypothetical ... 29 4.2
Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical pr... 28 5.6
U88184-7|AAK31516.1| 576|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear recep... 28 5.6
AF273794-1|AAG15142.1| 90|Caenorhabditis elegans nuclear recep... 28 5.6
AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear recep... 28 5.6
AF273792-1|AAG15140.1| 337|Caenorhabditis elegans nuclear recep... 28 5.6
U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alph... 28 7.4
U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alph... 28 7.4
AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeri... 28 7.4
AC024804-7|AAF60744.1| 322|Caenorhabditis elegans Hypothetical ... 28 7.4
Z69661-5|CAA93495.2| 346|Caenorhabditis elegans Hypothetical pr... 27 9.8
U27312-11|AAA68254.1| 461|Caenorhabditis elegans Forkhead trans... 27 9.8
>AF047652-4|AAC04392.2| 399|Caenorhabditis elegans Hypothetical
protein C34H4.3 protein.
Length = 399
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 590 TQNVATTENGRPLHSILNDNLVI 658
TQN+ ENG LH NDN+ +
Sbjct: 33 TQNIVPVENGAKLHVASNDNVTL 55
>Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical
protein K10C3.6d protein.
Length = 486
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 428 LPTNGVSPLNPAGSVGSVSSV 448
>Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical
protein K10C3.6c protein.
Length = 501
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 443 LPTNGVSPLNPAGSVGSVSSV 463
>Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical
protein K10C3.6b protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 418 LPTNGVSPLNPAGSVGSVSSV 438
>Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical
protein K10C3.6a protein.
Length = 477
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 419 LPTNGVSPLNPAGSVGSVSSV 439
>U88184-7|AAK31516.1| 576|Caenorhabditis elegans Hypothetical
protein F36H5.5 protein.
Length = 576
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 511 TSQPIRKHVVS*CFVLLELSNIYANAN 591
TS P KH+VS L + N+Y N N
Sbjct: 165 TSDPEMKHIVSILNAFLPVDNVYVNTN 191
>AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 475
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 417 LPTNGVSPLNPAGSVGSVSSV 437
>AF273794-1|AAG15142.1| 90|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 90
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 32 LPTNGVSPLNPAGSVGSVSSV 52
>AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 474
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 416 LPTNGVSPLNPAGSVGSVSSV 436
>AF273792-1|AAG15140.1| 337|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 337
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 491 LPTRAIKPRNPSGNMSSVSAL 553
LPT + P NP+G++ SVS++
Sbjct: 279 LPTNGVSPLNPAGSVGSVSSV 299
>U97196-5|AAB52458.3| 368|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform a protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 416 DRYLQLIAGSNTLKYGFD*IKEIKFEI 336
D YLQLIAGS + D I+ I +EI
Sbjct: 79 DIYLQLIAGSRVVGIPLDPIEHITYEI 105
>U97196-4|AAP68962.2| 408|Caenorhabditis elegans G protein, alpha
subunit protein14, isoform b protein.
Length = 408
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 416 DRYLQLIAGSNTLKYGFD*IKEIKFEI 336
D YLQLIAGS + D I+ I +EI
Sbjct: 119 DIYLQLIAGSRVVGIPLDPIEHITYEI 145
>AY008136-1|AAG32089.1| 368|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 416 DRYLQLIAGSNTLKYGFD*IKEIKFEI 336
D YLQLIAGS + D I+ I +EI
Sbjct: 79 DIYLQLIAGSRVVGIPLDPIEHITYEI 105
>AC024804-7|AAF60744.1| 322|Caenorhabditis elegans Hypothetical
protein Y51H7BR.2 protein.
Length = 322
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 300 SCKIKKIIRRFCYFEFYFFNLV 365
S K K IR FC F+ Y FN+V
Sbjct: 33 SNKTKHFIREFCIFKAYRFNIV 54
>Z69661-5|CAA93495.2| 346|Caenorhabditis elegans Hypothetical
protein F48F7.7 protein.
Length = 346
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 534 MFPDGLRGFIALVGRRAYGPPDGEWLPSPIDLSNARGRA 418
+F G+ + + Y P GE+LP ID+ NA RA
Sbjct: 178 IFKKGIVTITVTIPKAGYAP--GEYLPITIDIDNASKRA 214
>U27312-11|AAA68254.1| 461|Caenorhabditis elegans Forkhead
transcription factor familyprotein 5 protein.
Length = 461
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 174 TVVLQNVYSQSLWLCQVGEVHDVGRS*NERTLSCDISVEMFASCKIKKIIRRFCYFEFYF 353
TV+ Q++ CQVGE V +E + S I++ +F S IK II + Y +
Sbjct: 6 TVIFQSILFVQ---CQVGEAAFVISQEHEVSKSISINMTLFPS--IKWIIHKSFYLYLTY 60
Query: 354 FNLVKPIFQCIRTS 395
F + + C + +
Sbjct: 61 FVMSQQTLPCFQAA 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,546
Number of Sequences: 27780
Number of extensions: 343937
Number of successful extensions: 811
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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