Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0754
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -1

Query: 122 VCWLNILMIQYVCFNFLGTR 63
           +C++   ++++VC N++G +
Sbjct: 371 MCFIYASLLEFVCVNYVGRK 390


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -1

Query: 122 VCWLNILMIQYVCFNFLGTR 63
           +C++   ++++VC N++G +
Sbjct: 340 MCFIYASLLEFVCVNYVGRK 359


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -1

Query: 122 VCWLNILMIQYVCFNFLGTR 63
           +C++   ++++VC N++G +
Sbjct: 391 MCFIYASLLEFVCVNYVGRK 410


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -1

Query: 122 VCWLNILMIQYVCFNFLGTR 63
           +C++   ++++VC N++G +
Sbjct: 340 MCFIYASLLEFVCVNYVGRK 359


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 483 YGPPDGEWLPSPIDLSNARGRARPLPTANSWFEYT 379
           Y P +  WLP  +  +NA G         +  +YT
Sbjct: 109 YVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYT 143


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 477 PPDGEWLPSPIDLSNARG 424
           PPD  W P  +  +NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 501 LVGRRAYGPPDGEWLP 454
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,317
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)