Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0754
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01470.1 68414.m00062 late embryogenesis abundant protein, pu...    31   0.97 
At3g63180.1 68416.m07097 expressed protein                             29   3.0  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    29   3.0  
At4g36840.1 68417.m05224 kelch repeat-containing protein contain...    29   3.9  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    29   3.9  
At1g73640.1 68414.m08525 Ras-related GTP-binding family protein ...    28   6.8  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    27   9.0  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    27   9.0  

>At1g01470.1 68414.m00062 late embryogenesis abundant protein,
           putative / LEA protein, putative similar to SP|P46518
           Late embryogenesis abundant protein Lea14-A {Gossypium
           hirsutum}; contains Pfam profile PF03168: Late
           embryogenesis abundant protein
          Length = 151

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 144 VNREQIPILATVVLQNVYSQSLWLCQVG-EVHDVGR 248
           VNR+ +  LA V + N YS S+ +C++    H  GR
Sbjct: 34  VNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGR 69


>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +2

Query: 455 GNHSPSGGPYARLPTRAIKPRNPSGNMSSVSA 550
           G+H+  GGP+ ++    ++P+N S + +S+++
Sbjct: 693 GSHTQKGGPFGQIMAAPVQPQNFSMSFASIAS 724


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 507 IALVGRRAYGPPDGEWLP-SPIDLSNARGRA-RP 412
           + + G + Y P  GEW+  SP+D+    GRA RP
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRP 884


>At4g36840.1 68417.m05224 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 238

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 7   EKIKRYKSWLSYVFRKTSPRVPRKLKHTY*IIKI 108
           E+++ Y S   Y+FR+TS + P K    Y I KI
Sbjct: 134 EQLQLYLSGTRYIFRRTSDKRPSKTNVKYDIRKI 167


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 543 TDDMFPDGLRGFIALVGRRAYGPPDGEWLPSPIDLSNARGRARP 412
           TDD++ D L G+I  V RR YG     +L   +     R  A P
Sbjct: 142 TDDLYSDKLSGYIP-VDRRQYGEQSSSYLGRELQNEPTRRYADP 184


>At1g73640.1 68414.m08525 Ras-related GTP-binding family protein
           contains Pfam profile: PF00071 ras family Pfam profile:
           PF00071 Ras family
          Length = 233

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 135 KVLVNREQIPILATVVLQNVYSQSLWLCQVGEVHDV 242
           K L   E +  L T  L+NV  +  +L  +G +H+V
Sbjct: 142 KTLAESEGLYFLETSALENVNVEEAFLVMIGRIHEV 177


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 495 GRRAYGPPDGEWLPSPIDLSNARGRAR 415
           GR    P  GEW P+P D S+     R
Sbjct: 324 GRDRPNPSTGEWFPAPFDASSVDNMRR 350


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 495 GRRAYGPPDGEWLPSPIDLSNARGRAR 415
           GR    P  GEW P+P D S+     R
Sbjct: 324 GRDRPNPSTGEWFPAPFDASSVDNMRR 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,210
Number of Sequences: 28952
Number of extensions: 307724
Number of successful extensions: 674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)