Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0752
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C8G4 Cluster: Chromosome undetermined scaffold_158, w...    33   4.8  
UniRef50_A6AFB1 Cluster: Glycosyl transferase, group 1 family pr...    33   6.3  

>UniRef50_A0C8G4 Cluster: Chromosome undetermined scaffold_158,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_158,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2894

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +2

Query: 266 LVSSFQFFYINETKIWSLIS*VYL 337
           L++SFQFF +N+ +IW+LIS V L
Sbjct: 55  LMNSFQFFQLNQRQIWNLISNVQL 78


>UniRef50_A6AFB1 Cluster: Glycosyl transferase, group 1 family
           protein; n=1; Vibrio cholerae 623-39|Rep: Glycosyl
           transferase, group 1 family protein - Vibrio cholerae
           623-39
          Length = 358

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +2

Query: 107 LNSRFSS*LIQLLYKEAWIKE*LLNFSSNDENKFKEKNS*TQILMDSFFAIFRLV--SSF 280
           LNS F   +I L+  +  +     N  S D     +KN+     + +F  +F LV  S++
Sbjct: 28  LNSEFDVDIITLIDDDRGVNLNGFNNISLDVVSKNKKNNMLHFHVKTFIKLFNLVRKSNY 87

Query: 281 QFFYINETKIWSLIS*VYLLSINVNVKKTFCANLSF 388
            F   N T +  ++S    L+IN   K  F  +++F
Sbjct: 88  NFIIANSTFLSCILSLCAFLNINGKTKCVFYEHINF 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,462,609
Number of Sequences: 1657284
Number of extensions: 8796242
Number of successful extensions: 15180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15000
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)