Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0752
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       29   2.6  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 76 YYKYFVHYYNIIIFYFYKTLRCC 8
          YY Y+ +YY    +Y+Y    CC
Sbjct: 12 YYYYYYYYYYYYYYYYYYYYYCC 34


>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 106 Y*YASWFI*LYYKYFVHYYNIIIFYFY 26
           Y Y  ++   YY Y+ HYY    +Y+Y
Sbjct: 263 YYYYYYYYYYYYYYYYHYYYYYYYYYY 289



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 106 Y*YASWFI*LYYKYFVHYYNIIIFYFY 26
           Y Y  ++   YY Y+ +YY+   +Y+Y
Sbjct: 260 YYYYYYYYYYYYYYYYYYYHYYYYYYY 286


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 106 Y*YASWFI*LYYKYFVHYYNIIIFYFY 26
           Y Y  ++   YY Y+ HYY    +Y+Y
Sbjct: 116 YYYYYYYYYYYYYYYHHYYYYYYYYYY 142


>SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 100 YASWFI*LYYKYFVHYYNIIIFYFY 26
           YA ++   YY Y+ +YY    +Y+Y
Sbjct: 16  YAYYYYYYYYYYYYYYYYYYYYYYY 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,194
Number of Sequences: 59808
Number of extensions: 259186
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)