Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0752
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    30   1.7  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    30   1.7  
AF040661-17|AAG24227.2|  336|Caenorhabditis elegans Serpentine r...    28   5.3  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 210 KKRIRKHKF*WIRSLPYS 263
           KK+IR H+F W+ +LPYS
Sbjct: 174 KKQIRPHRFLWLFNLPYS 191


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 210 KKRIRKHKF*WIRSLPYS 263
           KK+IR H+F W+ +LPYS
Sbjct: 174 KKQIRPHRFLWLFNLPYS 191


>AF040661-17|AAG24227.2|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein59 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 27/92 (29%), Positives = 41/92 (44%)
 Frame = +2

Query: 203 KFKEKNS*TQILMDSFFAIFRLVSSFQFFYINETKIWSLIS*VYLLSINVNVKKTFCANL 382
           KFK +   T+IL  +F ++F       F YIN +    L   V L  I     + F +  
Sbjct: 136 KFKIQGKQTRILYFAFKSVFSFFILLPF-YINNSDQVELRKTV-LKQIPCPTIEFFDSKT 193

Query: 383 SFL*AWR*FYPLYRYVIKYGDTVDELLYFHFH 478
             L       PL+  +I +G  + E+L+F FH
Sbjct: 194 YVLLEPDEILPLFSNIIGFGGILAEVLFFLFH 225


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 410 YPLYRYVIKYGDTVDELLYFH 472
           +P+Y YV +Y D  D++  FH
Sbjct: 34  FPIYVYVYRYNDKNDKMALFH 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,382,777
Number of Sequences: 27780
Number of extensions: 226023
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)