Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0751
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 87 2e-18
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.0
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 27 1.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.4
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 27 3.1
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 27 3.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 5.5
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 7.2
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.2
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 9.5
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 87.0 bits (206), Expect = 2e-18
Identities = 38/77 (49%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Frame = +1
Query: 19 MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVE 192
MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+T+ + +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 193 VLATLTSDVGRIMSKLH 243
VL+TLT D G+ +S +H
Sbjct: 61 VLSTLTRDYGKFLSAMH 77
Score = 81.8 bits (193), Expect = 8e-17
Identities = 47/117 (40%), Positives = 65/117 (55%)
Frame = +3
Query: 249 PANGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNXDXKELVXLAKRLXXEKVNC 428
P G+ GI+IA LALKHR+ K + RIV FVGSP+ D K L+ LAKR+ V
Sbjct: 80 PVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAI 139
Query: 429 DVVSFGEDSXNNPLLTTFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLDRG 599
D++ GE N L F++ N D+ HLVS+P + LS+ + SP+ +G
Sbjct: 140 DIIHIGE-LQNESALQHFIDAANSSDS----CHLVSIPPSPQL-LSDLVNQSPIGQG 190
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 79 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 243
F P+RL + V L S + + EN++ + L N +L + + R + KLH
Sbjct: 664 FDPSRLLIFKGVVKLKASSYSNGDTENDIHMFLLDNFLLLCKIKIQMKRRVHKLH 718
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 420 VNCDVVSFGEDSXNNPLLTTFVNTLNGKDTRL 515
VN ++VS ED+ L TF+N + G ++
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEGHGKKI 367
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 638 RETNQSPEGPAPSPPIERTCYQSLRKPNTASSWHRHKV 525
RET + EGP P P + +L P+++ S ++ V
Sbjct: 750 RETEEEDEGPPPQPARPESTRPALAPPSSSHSNDKYDV 787
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 447 EDSXNNPLLTTFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLD 593
E+S +L T N + + SH + AGG G+ A+ T+PLD
Sbjct: 25 ENSQKTKVLLTKANNASNERAPPPLSHFI---AGGVAGMLGAIATAPLD 70
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 139 TRSNPENN-VGLLTLANVEVLATLTSDVGRIMSKLHRVQ 252
T + P+N+ V +L E++ATLT + + ++ R+Q
Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 233 PSSIASSQR*HQSIDRNPHCTFSFKTPSGKESQDAHSSF 349
PSS S+ H S+ + F+ PS +S S+F
Sbjct: 485 PSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNF 523
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 543 AGGCVGLSEALITSPLD 593
AGG GL+ +L+ +PLD
Sbjct: 11 AGGAAGLASSLVVAPLD 27
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -1
Query: 652 TPNSKGRQTRAQKGLLHHPLSRGLVIKASESPTQPPAGTDTR*LSPSRVSFPFSVLTKVV 473
TP + G TR K +L ++ A PP S + F F +L+ +V
Sbjct: 345 TPETGGWTTREMKSILRKLDGHLNLVGAEVVEVSPPYDDRAESTSLAASDFIFEILSSMV 404
Query: 472 KRGLF 458
K L+
Sbjct: 405 KHPLY 409
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 480 FVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLDRG*WSRP 614
F ++ G G + + +P+ V LS L+TSP RP
Sbjct: 389 FTSSPIGGSMPKGPNSIYKIPSASMVNLSSPLVTSPSGLNPTGRP 433
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 156 LRIGSCFGMTYQINSILLSLQSCRQEISISHVVTIV 49
+R + YQ+ ILLS QE +SHV I+
Sbjct: 285 IRFNTLLYYRYQLQEILLSYNHYPQESDMSHVHQIL 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,669
Number of Sequences: 5004
Number of extensions: 53621
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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