Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0751
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    87   2e-17
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539...    31   1.1  
03_06_0404 + 33692534-33693607                                         28   7.5  
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506...    28   7.5  
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389...    27   9.9  
06_03_1307 + 29218055-29218159,29218249-29218362,29218448-292186...    27   9.9  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 42/78 (53%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
 Frame = +1

Query: 25  LESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVEVL 198
           LE+T+ICVD+S++MRNGD+ PTRLQAQ+DA NLV  +K  SNPEN VG+L +A   V VL
Sbjct: 5   LEATVICVDDSEWMRNGDYPPTRLQAQEDAANLVVGTKMTSNPENTVGVLAMAGDRVRVL 64

Query: 199 ATLTSDVGRIMSKLHRVQ 252
              TSD  + ++ +H ++
Sbjct: 65  LAPTSDPVKFLACMHGLE 82



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
 Frame = +3

Query: 252 ANGDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNXDXKELVXLAKRLXXEKVNCD 431
           A+G+ NL   + IA L LK+R  K    RIVVFVGSPV  +  +L  + K+L    V+ D
Sbjct: 83  ASGEANLTATLNIAELVLKNRPDKRLSQRIVVFVGSPVKDE--KLETIGKKLKKYNVSLD 140

Query: 432 VVSFGEDSXNNP-LLTTFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLDRG 599
           VV FGE     P  L   V  +       G SH+V +P G    L   L  +P+  G
Sbjct: 141 VVEFGESDDEKPEKLEALVAAVG------GSSHIVHIPPG--EDLRAVLANTPIITG 189


>02_02_0584 -
           11853149-11853573,11853673-11853787,11853868-11853981,
           11854049-11854108,11854265-11854600,11854681-11854724,
           11854776-11855507,11855736-11855921,11856012-11856153,
           11856250-11856300
          Length = 734

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 623 SPEGPAPSPPIERTCYQSLRKPNTASSWHRHKVTLPQSSVFPI 495
           SP  P PSPP++++   S + P  A S+H  +   P +   P+
Sbjct: 516 SPPSPPPSPPVQQS--SSDQTPLAAGSYHVEEEEQPAAPAIPV 556


>03_06_0404 + 33692534-33693607
          Length = 357

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 282 IRIAHLALKHRQGKNHKMRIVVFVGSPVNXDXKELVXLAKRLXXEKVNCD 431
           + +A L L+H  G  HK   VV +G+      +  V LA R   E +N D
Sbjct: 37  VPVAPLVLRHGAGVKHK--AVVVMGATGTGKSRLAVDLALRFGGEVINSD 84


>01_01_0663 -
           5059881-5060119,5060682-5060898,5061008-5061838,
           5063560-5064120
          Length = 615

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +3

Query: 279 GIRIAHLALKHRQGKNHKMRIVVFVG-SPVNXDXKELVXLAKRLXXEKVNCDVVSFGEDS 455
           G  + H+A + R+ K     +      + V  D ++ V ++KRL  +     V   G+ S
Sbjct: 333 GYTVLHIAARRREPKIIVSLLTKGARPADVTFDGRKAVQISKRLTKQGDYFGVTEEGKPS 392

Query: 456 XNNPLLTTFVNTLNGKDTRLGESHLVSVPAG 548
             + L    +     +D +LGE+ +    AG
Sbjct: 393 PKDRLCIEILEQAERRDPQLGEASVSLAMAG 423


>07_03_0856 -
           22037345-22037665,22037962-22038108,22038201-22038978,
           22039092-22039384,22039663-22039758
          Length = 544

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 460 TTPF*LPLSTH*MGKTLDWGRVTLCLCQLEAVLG 561
           TTP+  PLS    GK L    + LC C L   +G
Sbjct: 208 TTPYEFPLSLFTDGKGLSLTELKLCECTLNIPIG 241


>06_03_1307 +
           29218055-29218159,29218249-29218362,29218448-29218660,
           29218967-29219457,29219653-29219752,29219835-29219894,
           29220055-29220147,29220270-29220368,29220484-29220804
          Length = 531

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 632 TNQSPEGPAPSPPIERTCYQSLRKPNTASSW 540
           T +   GP+PS     + + SL +P + SSW
Sbjct: 213 TEKQQSGPSPSGNYSISAFWSLSEPTSISSW 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,520,263
Number of Sequences: 37544
Number of extensions: 386594
Number of successful extensions: 1129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)