Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0751
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)              138   5e-33
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.6  

>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score =  138 bits (333), Expect = 5e-33
 Identities = 69/111 (62%), Positives = 82/111 (73%)
 Frame = +3

Query: 258 GDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNXDXKELVXLAKRLXXEKVNCDVV 437
           GD+N LT ++ AHL LKHRQGKNHKMRIVVFVGSP+  D KE+V LAK+L  EKVN DVV
Sbjct: 66  GDVNFLTAVKKAHLVLKHRQGKNHKMRIVVFVGSPIESDEKEIVKLAKKLKKEKVNVDVV 125

Query: 438 SFGEDSXNNPLLTTFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPL 590
           +FGE+  N   LT F+N LNGKD  L  SHLV+VP G    LS AL++S +
Sbjct: 126 NFGEEESNTEKLTAFINILNGKDGNL--SHLVTVPPGPI--LSNALVSSAI 172



 Score =  112 bits (270), Expect = 2e-25
 Identities = 48/64 (75%), Positives = 60/64 (93%)
 Frame = +1

Query: 64  MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLH 243
           MRNGDFLPTR+QAQQDAV+L+CHSKTR NPENNVGL+T A++EVL TLT+DVG++++ LH
Sbjct: 1   MRNGDFLPTRIQAQQDAVSLICHSKTRQNPENNVGLMTTASLEVLVTLTTDVGKLLTTLH 60

Query: 244 RVQP 255
           +VQP
Sbjct: 61  KVQP 64


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 31  STMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPEN 159
           S M+  DN  ++ N DF   ++   ++ +N V  S   + PEN
Sbjct: 74  SVMVSHDNERFVDNNDFTSRKMLTAEEMINAVFESNLNNRPEN 116


>SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 623 SPEGPAPSPPIERTCYQSLRKPNTASSWHRHKVTLP--QSSVFP 498
           SP+  +PSPP E T +Q    P   S++ +H ++ P   S +FP
Sbjct: 54  SPQTQSPSPPAEYTGFQKAFTPYVQSNYPQHFISPPPRYSDMFP 97


>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 650 SKFERETNQSPEGPAPSPPIERT 582
           S+FERE  ++  GPAP PP   T
Sbjct: 82  SEFERERGKTGGGPAPKPPSAAT 104


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 653 YSKFERETNQSPEGPAPSPPIERTCYQSLRKP 558
           Y+ ++RE    P+GP+P   +    Y + R+P
Sbjct: 157 YTDYQREQFTYPQGPSPGGTVHHHGYNAPRRP 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,153,299
Number of Sequences: 59808
Number of extensions: 427937
Number of successful extensions: 1069
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)