Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0751
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (...   107   5e-24
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ...    31   0.51 
At3g51870.1 68416.m05688 mitochondrial substrate carrier family ...    31   0.51 
At5g27540.1 68418.m03297 GTP-binding protein-related low similar...    29   2.7  
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    29   3.6  
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi...    27   8.2  

>At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A
           (RPN10) identical to multiubiquitin chain binding
           protein (MBP1) SP:P55034, GI:1165206
          Length = 386

 Score =  107 bits (258), Expect = 5e-24
 Identities = 49/77 (63%), Positives = 66/77 (85%), Gaps = 2/77 (2%)
 Frame = +1

Query: 19  MVLESTMICVDNSDYMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLTLA--NVE 192
           MVLE+TMIC+DNS++MRNGD+ P+RLQAQ +AVNL+C +KT+SNPEN VG+LT+A   V 
Sbjct: 1   MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60

Query: 193 VLATLTSDVGRIMSKLH 243
           VL T TSD+G+I++ +H
Sbjct: 61  VLTTPTSDLGKILACMH 77



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
 Frame = +3

Query: 258 GDINLLTGIRIAHLALKHRQGKNHKMRIVVFVGSPVNXDXKELVXLAKRLXXEKVNCDVV 437
           G+INL   I+IA LALKHRQ KN + RI+VF GSP+  + K L  + KRL    V+ D+V
Sbjct: 83  GEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIV 142

Query: 438 SFGEDSXNN--PLLTTFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLDRG 599
           +FGED        L   +  +N  D     SH+V VP+ G   LS+ L+++P+  G
Sbjct: 143 NFGEDDDEEKPQKLEALLTAVNNND----GSHIVHVPS-GANALSDVLLSTPVFTG 193


>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 415

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 477 TFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLD 593
           T+     GKD +L  S L  + AG C G++  LIT PLD
Sbjct: 201 TYKKLFRGKDGQL--SVLGRLGAGACAGMTSTLITYPLD 237


>At3g51870.1 68416.m05688 mitochondrial substrate carrier family
           protein peroxisomal Ca-dependent solute carrier -
           Oryctolagus cuniculus, EMBL:AF004161
          Length = 381

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 477 TFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLD 593
           ++ N   GKD +L  S +  + AG C G++  L+T PLD
Sbjct: 173 SYKNLFKGKDDQL--SVIGRLAAGACAGMTSTLLTYPLD 209


>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
           to Mig-2-like GTPase Mtl [Drosophila melanogaster]
           GI:7271872; contains Pfam profile PF00036: EF hand
          Length = 648

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 609 CSITPYREDLLSKPQKAQHSLQLAQTQGDSPPVECLSHL 493
           C +   ++DL S P   Q S ++ Q  G  PPV   S L
Sbjct: 541 CLMVSAKDDLDSSPISIQESTRMTQDMGIEPPVSISSKL 579


>At5g10720.1 68418.m01242 sensory transduction histidine
           kinase-related similar to Sensor protein rcsC (Capsular
           synthesis regulator component C) (SP:Q56128) {Salmonella
           typhi}; sensory transduction histidine kinase slr1759,
           Synechocystis sp., PIR:S75142
          Length = 950

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 450 DSXNNPLLTTFVNTLNGKDTRLGESHLVSVPAGGCVGLSEALITSPLDR 596
           +S  N  +     T+  K      SH +  P  G VG++E L T+ LD+
Sbjct: 347 ESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTKLDK 395


>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 974

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 640 KGRQTRAQKGLLHHPLSRGLVIK 572
           KGR   A KGL+H  +S G+ IK
Sbjct: 324 KGRNADAAKGLVHEMVSHGINIK 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,693,442
Number of Sequences: 28952
Number of extensions: 301142
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)