Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0750
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1GYU9 Cluster: Transcriptional regulator, LysR family;...    34   3.8  
UniRef50_UPI0001555B68 Cluster: PREDICTED: similar to CSF2RB; n=...    33   5.1  
UniRef50_UPI00006CC943 Cluster: hypothetical protein TTHERM_0034...    33   5.1  
UniRef50_A5JZQ8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q1FFY4 Cluster: Binding-protein-dependent transport sys...    33   8.8  

>UniRef50_Q1GYU9 Cluster: Transcriptional regulator, LysR family;
           n=6; Proteobacteria|Rep: Transcriptional regulator, LysR
           family - Methylobacillus flagellatus (strain KT / ATCC
           51484 / DSM 6875)
          Length = 303

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 15/47 (31%), Positives = 30/47 (63%)
 Frame = +2

Query: 269 VVQKKKKNYTLCHLGIV*LPNSERIFQIGSVVSESIQYKQTNKSFLF 409
           ++Q+  +   L   G + LP +ERIF+IGS++ E++Q++   +  +F
Sbjct: 47  LLQRAGRGLELTDAGRLALPYAERIFEIGSMLEETLQHQPKKRPRVF 93


>UniRef50_UPI0001555B68 Cluster: PREDICTED: similar to CSF2RB; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to
           CSF2RB - Ornithorhynchus anatinus
          Length = 433

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 340 NFSN-RFSSFGVYSIQTNKQIFPLYNISIKNSVKPFDACKIKCRMSLEHGSLKHWN 504
           NFS+   SS  +YS QT +++    N+ +  SV+P    ++K +   E G L  WN
Sbjct: 91  NFSSFTSSSVDIYSFQTTRELKAELNVDLFRSVQPPAPKQLKVKSIGEKGFLLSWN 146


>UniRef50_UPI00006CC943 Cluster: hypothetical protein
           TTHERM_00344200; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00344200 - Tetrahymena
           thermophila SB210
          Length = 1102

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +2

Query: 128 KNLFYKVVLHYFILLSIVFAGYAM*RIF*VIFLHLGLHYWSFIRIPNVVQKKKKNY 295
           +N FYK+ L++   L ++ AG     I   I L +GLH+ S I +  V   K+K Y
Sbjct: 831 RNSFYKIFLYFRKFLYVIIAGGLQISINAQIGLQIGLHFCSLIILFCVKPYKQKFY 886


>UniRef50_A5JZQ8 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 2397

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 688  KKNFSIYLLIYNIGFSTELSYTYNTYTYKLR*IIIKTHNINENVFT 551
            K N S    +YN   ++ LS+TYN Y Y     IIK+  +N NVF+
Sbjct: 1340 KCNESANTTMYNEYINSVLSFTYNMYPYSYNYDIIKSQYVN-NVFS 1384


>UniRef50_Q1FFY4 Cluster: Binding-protein-dependent transport
           systems inner membrane component; n=1; Clostridium
           phytofermentans ISDg|Rep: Binding-protein-dependent
           transport systems inner membrane component - Clostridium
           phytofermentans ISDg
          Length = 294

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 166 SIINSFRRVRDVKNILGNFFTSWVTLLEFY 255
           SIINSF+  ++V  + GN+ + WV LL+ Y
Sbjct: 222 SIINSFKIFKEVFLLFGNYPSEWVYLLQHY 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,633,762
Number of Sequences: 1657284
Number of extensions: 10999628
Number of successful extensions: 19620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19615
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)